scholarly journals Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones

2019 ◽  
Vol 13 (10) ◽  
pp. 2391-2402 ◽  
Author(s):  
Xin Sun ◽  
Linnea F. M. Kop ◽  
Maggie C. Y. Lau ◽  
Jeroen Frank ◽  
Amal Jayakumar ◽  
...  
Keyword(s):  
Oxygen Minimum Zones ◽  
Nitrite Oxidizing Bacteria ◽  
Oxygen Minimum

scholarly journals Microbial niche differentiation explains nitrite oxidation in marine oxygen minimum zones

2021 ◽  
Author(s):  
Xin Sun ◽  
Claudia Frey ◽  
Emilio Garcia-Robledo ◽  
Amal Jayakumar ◽  
Bess B. Ward
Keyword(s):  
Nitrogen Loss ◽  
Niche Differentiation ◽  
Nitrite Reduction ◽  
Nitrite Oxidation ◽  
Fixed Nitrogen ◽  
Anoxic Waters ◽  
Biogeochemical Models ◽  
Nitrite Oxidizing Bacteria ◽  
Oxygen Addition ◽  
Oxygen Minimum

AbstractNitrite is a pivotal component of the marine nitrogen cycle. The fate of nitrite determines the loss or retention of fixed nitrogen, an essential nutrient for all organisms. Loss occurs via anaerobic nitrite reduction to gases during denitrification and anammox, while retention occurs via nitrite oxidation to nitrate. Nitrite oxidation is usually represented in biogeochemical models by one kinetic parameter and one oxygen threshold, below which nitrite oxidation is set to zero. Here we find that the responses of nitrite oxidation to nitrite and oxygen concentrations vary along a redox gradient in a Pacific Ocean oxygen minimum zone, indicating niche differentiation of nitrite-oxidizing assemblages. Notably, we observe the full inhibition of nitrite oxidation by oxygen addition and nitrite oxidation coupled with nitrogen loss in the absence of oxygen consumption in samples collected from anoxic waters. Nitrite-oxidizing bacteria, including novel clades with high relative abundance in anoxic depths, were also detected in the same samples. Mechanisms corresponding to niche differentiation of nitrite-oxidizing bacteria across the redox gradient are considered. Implementing these mechanisms in biogeochemical models has a significant effect on the estimated fixed nitrogen budget.

scholarly journals In situ quantification of ultra‐low O 2 concentrations in oxygen minimum zones: Application of novel optodes

2016 ◽  
Vol 14 (12) ◽  
pp. 784-800 ◽  
Author(s):  
Morten Larsen ◽  
Philipp Lehner ◽  
Sergey M. Borisov ◽  
Ingo Klimant ◽  
Jan P. Fischer ◽  
...  
Keyword(s):  
Oxygen Minimum Zones ◽  
Oxygen Minimum

scholarly journals Expanded oxygen minimum zones during the late Paleocene-early Eocene: Hints from multiproxy comparison and ocean modeling

2016 ◽  
Vol 31 (12) ◽  
pp. 1532-1546 ◽  
Author(s):  
X. Zhou ◽  
E. Thomas ◽  
A. M. E. Winguth ◽  
A. Ridgwell ◽  
H. Scher ◽  
...  
Keyword(s):  
Ocean Modeling ◽  
Early Eocene ◽  
Oxygen Minimum Zones ◽  
Late Paleocene ◽  
Oxygen Minimum

scholarly journals Toward a global calibration for quantifying past oxygenation in oxygen minimum zones using benthic Foraminifera

2021 ◽  
Author(s):  
Martin Tetard ◽  
Laetitia Licari ◽  
Kazuyo Tachikawa ◽  
Ekaterina Ovsepyan ◽  
Luc Beaufort
Keyword(s):  
North Pacific ◽  
Transfer Functions ◽  
Late Quaternary ◽  
Global Climate ◽  
Single Species ◽  
Pore Waters ◽  
Oxygen Minimum Zones ◽  
Global Calibration ◽  
Circularity Index ◽  
Oxygen Minimum

Abstract. Oxygen Minimum Zones (OMZs) are oceanic areas largely depleted in dissolved oxygen, nowadays considered in expansion in the face of global warming. Their ecological and economic consequences are being debated. The investigation of past OMZ conditions allows us to better understand biological and physical mechanisms responsible for their variability with regards to climate change, carbon pump and carbonate system. To investigate the relationship between OMZ expansion and global climate changes during the late Quaternary, quantitative oxygen reconstructions are needed, but are still in their early development. Here, past bottom water oxygenation (BWO) was quantitatively assessed through a new, fast, semi-automated, and taxonfree morphometric analysis of benthic foraminiferal tests, developed and calibrated using Eastern North Pacific (ENP) and the Eastern South Pacific (ESP) OMZs samples. This new approach is based on an average size and circularity index for each sample. This method, as well as two already published micropalaeontological approaches based on benthic foraminiferal assemblages variability and porosity investigation of a single species, were here calibrated based on availability of new data from 23 core tops recovered along an oxygen gradient (from 0.03 to 1.79 mL.L−1) from the ENP, ESP, AS (Arabian Sea) and WNP (Western North Pacific, including its marginal seas) OMZs. Global calibrated transfer functions are thus herein proposed for each of these methods. These micropalaeontological reconstruction approaches were then applied on a paleorecord from the ENP OMZ to examine the consistency and limits of these methods, as well as the relative influence of bottom and pore waters on these micropalaeontological tools. Both the assemblages and morphometric approaches (that is also ultimately based on the ecological response of the complete assemblage and faunal succession according to BWO) gave similar and consistent past BWO reconstructions, while the porosity approach (based on a single species and its unique response to a mixed signal of bottom and pore waters) shown ambiguous estimations.

scholarly journals Modulation of the vertical particles transfer efficiency in the Oxygen Minimum Zone off Peru

2018 ◽  
Author(s):  
Marine Bretagnon ◽  
Aurélien Paulmier ◽  
Véronique Garçon ◽  
Boris Dewitte ◽  
Sérena Illig ◽  
...  
Keyword(s):  
Organic Matter ◽  
Water Column ◽  
Sediment Traps ◽  
Biogeochemical Cycles ◽  
High Temporal Resolution ◽  
Oxygen Minimum Zones ◽  
Marine Life ◽  
Minimum Zone ◽  
Earth’S System ◽  
Oxygen Minimum

Abstract. The fate of the Organic Matter (OM) produced by marine life controls the major biogeochemical cycles of the Earth’s system. The OM produced through photosynthesis is either preserved, exported towards sediments or degraded through remineralisation in the water column. The productive Eastern Boundary Upwelling Systems (EBUSs) associated with Oxygen Minimum Zones (OMZs) should foster OM preservation due to low O2 conditions, but their intense and diverse microbial activity should enhance OM degradation. To investigate this contradiction, sediment traps were deployed near the oxycline and in the OMZ core on an instrumented moored line off Peru, providing high temporal resolution O2 series characterizing two seasonal steady states at the upper trap: suboxic ([O2] 

scholarly journals Anthropogenic carbon in the eastern South Pacific Ocean

2007 ◽  
Vol 4 (3) ◽  
pp. 1815-1837 ◽  
Author(s):  
L. Azouzi ◽  
R. Gonçalves Ito ◽  
F. Touratier ◽  
C. Goyet
Keyword(s):  
Pacific Ocean ◽  
General Trend ◽  
South Pacific ◽  
Hydrodynamic Characteristics ◽  
Eastern Pacific Ocean ◽  
Previous Knowledge ◽  
Oxygen Minimum Zones ◽  
South Pacific Ocean ◽  
Anthropogenic Carbon ◽  
Oxygen Minimum

Abstract. We present results from the BIOSOPE cruise in the eastern South Pacific Ocean. In particular, we present estimates of the anthropogenic carbon CantTrOCA distribution in this area using the TrOCA method recently developed by Touratier and Goyet (2004a, b) and Touratier et al. (2007). We study the distribution of this anthropogenic carbon taking into account of the hydrodynamic characteristics of this region. We then compare these results with earlier estimates in nearby areas of the anthropogenic carbon as well as other anthropogenic tracer (CFC-11). The highest concentrations of CantTrOCA are located around 13° S 132° W and 32° S 91° W, and their concentrations are larger than 80 μmol kg−1 and 70 μmol kg−1, respectively. The lowest concentrations were observed below 800 m depths (≤2 μ mol kg−1) and at the Oxygen Minimum Zones (OMZ), mainly around 140° W (<11 μmol kg−1). The comparison with earlier work in nearby areas provides a general trend and indicates that the results presented here are in general agreement with previous knowledge. This work further improves our understanding on the penetration of anthropogenic carbon in the eastern Pacific Ocean.

scholarly journals Contrasting biogeochemistry of nitrogen in the Atlantic and Pacific Oxygen Minimum Zones

2012 ◽  
Vol 9 (1) ◽  
pp. 203-215 ◽  
Author(s):  
E. Ryabenko ◽  
A. Kock ◽  
H. W. Bange ◽  
M. A. Altabet ◽  
D. W. R. Wallace
Keyword(s):  
Surface Waters ◽  
Inorganic Nitrogen ◽  
Sharp Decrease ◽  
Stable Isotope Ratio ◽  
Saharan Dust ◽  
N Loss ◽  
Fractionation Factor ◽  
Oxygen Minimum Zones ◽  
Oxygen Minimum ◽  
Oxygen Concentrations

Abstract. We present new data for the stable isotope ratio of inorganic nitrogen species from the contrasting oxygen minimum zones (OMZs) of the Eastern Tropical North Atlantic, south of Cape Verde, and the Eastern Tropical South Pacific off Peru. Differences in minimum oxygen concentration and corresponding N-cycle processes for the two OMZs are reflected in strongly contrasting δ15N distributions. Pacific surface waters are marked by strongly positive values for δ15N-NO3–) reflecting fractionation associated with subsurface N-loss and partial NO3– utilization. This contrasts with negative values in NO3– depleted surface waters of the Atlantic which are lower than can be explained by N supply via N2 fixation. We suggest the negative values reflect inputs of nitrate, possibly transient, associated with deposition of Saharan dust. Strong signals of N-loss processes in the subsurface Pacific OMZ are evident in the isotope and N2O data, both of which are compatible with a contribution of canonical denitrification to overall N-loss. However the apparent N isotope fractionation factor observed is relatively low (&amp;varepsilon;d=11.4 ‰) suggesting an effect of influence from denitrification in sediments. Identical positive correlation of N2O vs. AOU for waters with oxygen concentrations ([O2] < 5 μmol l−1) in both regions reflect a nitrification source. Sharp decrease in N2O concentrations is observed in the Pacific OMZ due to denitrification under oxygen concentrations O2 < 5 μmol l−1.

Oxygen minimum zones (OMZs) in the modern ocean

2009 ◽  
Vol 80 (3-4) ◽  
pp. 113-128 ◽  
Author(s):  
A. Paulmier ◽  
D. Ruiz-Pino
Keyword(s):  
Oxygen Minimum Zones ◽  
Oxygen Minimum
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