A detailed marmoset brain atlas

AbstractHarnessing the maximum diagnostic potential of magnetic resonance imaging (MRI) by including stroke lesion location in relation to specific structures that are associated with particular functions will likely increase the potential to predict functional deficit type, severity, and recovery in stroke patients. This exploratory study aims to identify key structures lesioned by a middle cerebral artery occlusion (MCAO) that impact stroke recovery and to strengthen the predictive capacity of neuroimaging techniques that characterize stroke outcomes in a translational porcine model. Clinically relevant MRI measures showed significant lesion volumes, midline shifts, and decreased white matter integrity post-MCAO. Using a pig brain atlas, damaged brain structures included the insular cortex, somatosensory cortices, temporal gyri, claustrum, and visual cortices, among others. MCAO resulted in severely impaired spatiotemporal gait parameters, decreased voluntary movement in open field testing, and higher modified Rankin Scale scores at acute timepoints. Pearson correlation analyses at acute timepoints between standard MRI metrics (e.g., lesion volume) and functional outcomes displayed moderate R values to functional gait outcomes. Moreover, Pearson correlation analyses showed higher R values between functional gait deficits and increased lesioning of structures associated with motor function, such as the putamen, globus pallidus, and primary somatosensory cortex. This correlation analysis approach helped identify neuroanatomical structures predictive of stroke outcomes and may lead to the translation of this topological analysis approach from preclinical stroke assessment to a clinical biomarker.

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Homologous laminar organization of the mouse and human subiculum

Scientific Reports ◽

10.1038/s41598-021-81362-w ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Michael S. Bienkowski ◽

Farshid Sepehrband ◽

Nyoman D. Kurniawan ◽

Jim Stanis ◽

Laura Korobkova ◽

...

Keyword(s):

Gene Expression ◽

Hippocampal Formation ◽

Expression Patterns ◽

Pyramidal Cells ◽

Brain Structures ◽

Longitudinal Axis ◽

Brain Atlas ◽

Fiber Density ◽

Laminar Organization ◽

Hybridization Data

AbstractThe subiculum is the major output component of the hippocampal formation and one of the major brain structures most affected by Alzheimer’s disease. Our previous work revealed a hidden laminar architecture within the mouse subiculum. However, the rotation of the hippocampal longitudinal axis across species makes it unclear how the laminar organization is represented in human subiculum. Using in situ hybridization data from the Allen Human Brain Atlas, we demonstrate that the human subiculum also contains complementary laminar gene expression patterns similar to the mouse. In addition, we provide evidence that the molecular domain boundaries in human subiculum correspond to microstructural differences observed in high resolution MRI and fiber density imaging. Finally, we show both similarities and differences in the gene expression profile of subiculum pyramidal cells within homologous lamina. Overall, we present a new 3D model of the anatomical organization of human subiculum and its evolution from the mouse.

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Development of a photochemical thrombosis investigation system to obtain a rabbit ischemic stroke model

Scientific Reports ◽

10.1038/s41598-021-85348-6 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Yoonhee Kim ◽

Yoon Bum Lee ◽

Seung Kuk Bae ◽

Sung Suk Oh ◽

Jong-ryul Choi

Keyword(s):

Ischemic Stroke ◽

Brain Damage ◽

Rabbit Model ◽

Specific Area ◽

Brain Atlas ◽

Rabbit Brain ◽

Stroke Model ◽

Triphenyltetrazolium Chloride ◽

Induction System

AbstractPhotochemical thrombosis is a method for the induction of ischemic stroke in the cerebral cortex. It can generate localized ischemic infarcts in the desired region; therefore, it has been actively employed in establishing an ischemic stroke animal model and in vivo assays of diagnostic and therapeutic techniques for stroke. To establish a rabbit ischemic stroke model and overcome the shortcoming of previous studies that were difficult to build a standardized photothrombotic rabbit model, we developed a photochemical thrombosis induction system that can produce consistent brain damage on a specific area. To verify the generation of photothrombotic brain damage using the system, longitudinal magnetic resonance imaging, 2,3,5-triphenyltetrazolium chloride staining, and histological staining were applied. These analytical methods have a high correlation for ischemic infarction and are appropriate for analyzing photothrombotic brain damage in the rabbit brain. The results indicated that the photothrombosis induction system has a main advantage of being accurately controlled a targeted region of photothrombosis and can produce cerebral hemisphere lesions on the target region of the rabbit brain. In conjugation with brain atlas, it can induce photochemical ischemic stroke locally in the part of the brain that is responsible for a particular brain function and the system can be used to develop animal models with degraded specific functions. Also, the photochemical thrombosis induction system and a standardized rabbit ischemic stroke model that uses this system have the potential to be used for verifications of biomedical techniques for ischemic stroke at a preclinical stage in parallel with further performance improvements.

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Constructing the rodent stereotaxic brain atlas: a survey

Science China Life Sciences ◽

10.1007/s11427-020-1911-9 ◽

2021 ◽

Author(s):

Zhao Feng ◽

Anan Li ◽

Hui Gong ◽

Qingming Luo

Keyword(s):

Brain Atlas

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Whole brain atlas-based diffusion kurtosis imaging parameters for evaluation of minimal hepatic encephalopathy

The Neuroradiology Journal ◽

10.1177/19714009211026924 ◽

2021 ◽

pp. 197140092110269

Author(s):

Prateek Gupta ◽

Sameer Vyas ◽

Teddy Salan ◽

Chirag Jain ◽

Sunil Taneja ◽

...

Keyword(s):

Hepatic Encephalopathy ◽

Clinical Symptoms ◽

Early Stage ◽

Imaging Techniques ◽

Clinical Stage ◽

Minimal Hepatic Encephalopathy ◽

Brain Atlas ◽

Diffusion Kurtosis Imaging ◽

Whole Brain ◽

Diffusion Kurtosis

Background and purposes Minimal hepatic encephalopathy (MHE) has no recognizable clinical symptoms, but patients have cognitive and psychomotor deficits. Hyperammonemia along with neuroinflammation lead to microstructural changes in cerebral parenchyma. Changes at conventional imaging are detected usually at the overt clinical stage, but microstructural alterations by advanced magnetic resonance imaging techniques can be detected at an early stage. Materials and methods Whole brain diffusion kurtosis imaging (DKI) data acquired at 3T was analyzed to investigate microstructural parenchymal changes in 15 patients with MHE and compared with 15 age- and sex-matched controls. DKI parametric maps, namely kurtosis fractional anisotropy (kFA), mean kurtosis (MK), axial kurtosis (AK) and radial kurtosis (RK), were evaluated at 64 white matter (WM) and gray matter (GM) regions of interest (ROIs) in the whole brain and correlated with the psychometric hepatic encephalopathy score (PHES). Results The MHE group showed a decrease in kFA and AK across the whole brain, whereas MK and RK decreased in WM ROIs but increased in several cortical and deep GM ROIs. These alterations were consistent with brain regions involved in cognitive function. Significant moderate to strong correlations (–0.52 to –0.66; 0.56) between RK, MK and kFA kurtosis metrics and PHES were observed. Conclusion DKI parameters show extensive microstructural brain abnormalities in MHE with minor correlation between the severity of tissue damage and psychometric scores.

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