Differential expression of microRNAs by arsenate and arsenite stress in natural accessions of rice

Metallomics ◽  
2015 ◽  
Vol 7 (1) ◽  
pp. 174-187 ◽  
Author(s):  
Deepika Sharma ◽  
Manish Tiwari ◽  
Deepika Lakhwani ◽  
Rudra Deo Tripathi ◽  
Prabodh Kumar Trivedi

Study suggests that arsenic species- and rice cultivar-specific miRNA-dependent regulatory mechanisms play an important role in arsenic stress adaptation and detoxification.

1988 ◽  
Vol 8 (9) ◽  
pp. 3929-3933 ◽  
Author(s):  
K Tokunaga ◽  
K Takeda ◽  
K Kamiyama ◽  
H Kageyama ◽  
K Takenaga ◽  
...  

We described the structures of mouse cytoskeletal gamma-actin cDNA clones and showed that there is strong conservation of the untranslated regions with human gamma-actin cDNA. In addition, we found that the expression levels of beta- and gamma-actin mRNAs are differentially controlled in various mouse tissues and cell types but are coordinately increased in the cellular growing state. These results suggest that there are multiple regulatory mechanisms of cytoskeletal actin genes and are consistent with the argument that beta- and gamma-actins might have functional diversity in mammalian cells.


2019 ◽  
Vol 101 (4) ◽  
pp. 800-812
Author(s):  
Boyang Shi ◽  
Huijie Lu ◽  
Lihong Zhang ◽  
Weimin Zhang

Abstract Nr5a1 (Sf-1) up-regulates lhb expression across vertebrates; however, its regulatory roles on fshb remain to be defined. Moreover, the involvement of Nr5a2 in the regulation of gonadotropin expression is not clear either. In the present study, the involvement of Nr5a1b (a homologue of Nr5a1) and Nr5a2 in the regulation of lhb and fshb expression in the orange-spotted grouper was examined. Dual fluorescent immunohistochemistry using homologous antisera showed that in the pituitary of orange-spotted groupers, Lh cells contain both immunoreactive Nr5a1b and Nr5a2 signals, whereas Fsh cells contain neither of them. In LβT2 cells, Nr5a1b up-regulated basal activities of lhb and fshb promoters possibly via Nr5a sites, and synergistically (on lhb promoter) or additively (on fshb promoter) with forskolin. Surprisingly, Nr5a2 inhibited basal activities of lhb promoter possibly via Nr5a sites and attenuated the stimulatory effects of both forskolin and Nr5a1b. In contrast, Nr5a2 had no effects on fshb promoter. Chromatin immunoprecipitation analysis showed that both Nr5a1b and Nr5a2 bound to lhb promoter, but not fshb promoter in the pituitary of the orange-spotted grouper. The abundance of Nr5a1b bound to lhb promoter was significantly higher at the vitellogenic stage than the pre-vitellogenic stage, whereas that of Nr5a2 exhibited an opposite trend. Taken together, data of the present study demonstrated antagonistic effects of Nr5a1b and Nr5a2 on lhb transcription in the orange-spotted grouper and revealed novel regulatory mechanisms of differential expression of lhb and fshb genes through Nr5a homologues in vertebrates.


Neuropeptides ◽  
2009 ◽  
Vol 43 (1) ◽  
pp. 1-12 ◽  
Author(s):  
Anne H. Tran ◽  
Alexandra Berger ◽  
Gillian E. Wu ◽  
Christopher J. Paige

2016 ◽  
Vol 35 (6) ◽  
pp. 1642-1645 ◽  
Author(s):  
Renitta Jobby ◽  
Kinjal Shah ◽  
Ruchi Shah ◽  
Pamela Jha ◽  
Nitin Desai

2019 ◽  
Author(s):  
Hirotaka Matsumoto ◽  
Tetsutaro Hayashi ◽  
Haruka Ozaki ◽  
Koki Tsuyuzaki ◽  
Mana Umeda ◽  
...  

AbstractSingle-cell RNA sequencing has enabled researchers to quantify the transcriptomes of individual cells, infer cell types, and investigate differential expression among cell types, which will lead to a better understanding of the regulatory mechanisms of cell states. Transcript diversity caused by phenomena such as aberrant splicing events have been revealed, and differential expression of previously unannotated transcripts might be overlooked by annotation-based analyses.Accordingly, we have developed an approach to discover overlooked differentially expressed (DE) gene regions that complements annotation-based methods. We applied our algorithm to two datasets and discovered several intriguing DE transcripts, including a transcript related to the modulation of neural stem/progenitor cell differentiation.


1988 ◽  
Vol 8 (9) ◽  
pp. 3929-3933
Author(s):  
K Tokunaga ◽  
K Takeda ◽  
K Kamiyama ◽  
H Kageyama ◽  
K Takenaga ◽  
...  

We described the structures of mouse cytoskeletal gamma-actin cDNA clones and showed that there is strong conservation of the untranslated regions with human gamma-actin cDNA. In addition, we found that the expression levels of beta- and gamma-actin mRNAs are differentially controlled in various mouse tissues and cell types but are coordinately increased in the cellular growing state. These results suggest that there are multiple regulatory mechanisms of cytoskeletal actin genes and are consistent with the argument that beta- and gamma-actins might have functional diversity in mammalian cells.


2021 ◽  
Vol 12 ◽  
Author(s):  
Zhihui Xu ◽  
Xiaobo Shi ◽  
Mengmei Bao ◽  
Xiaoqian Song ◽  
Yuxia Zhang ◽  
...  

The remodeling of transcriptome, epigenome, proteome, and metabolome in hybrids plays an important role in heterosis. N(6)-methyladenosine (m6A) methylation is the most abundant type of post-transcriptional modification for mRNAs, but the pattern of inheritance from parents to hybrids and potential impact on heterosis are largely unknown. We constructed transcriptome-wide mRNA m6A methylation maps of Arabidopsis thaliana Col-0 and Landsberg erecta (Ler) and their reciprocal F1 hybrids. Generally, the transcriptome-wide pattern of m6A methylation tends to be conserved between accessions. Approximately 74% of m6A methylation peaks are consistent between the parents and hybrids, indicating that a majority of the m6A methylation is maintained after hybridization. We found a significant association between differential expression and differential m6A modification, and between non-additive expression and non-additive methylation on the same gene. The overall RNA m6A level between Col-0 and Ler is clearly different but tended to disappear at the allelic sites in the hybrids. Interestingly, many enriched biological functions of genes with differential m6A modification between parents and hybrids are also conserved, including many heterosis-related genes involved in biosynthetic processes of starch. Collectively, our study revealed the overall pattern of inheritance of mRNA m6A modifications from parents to hybrids and a potential new layer of regulatory mechanisms related to heterosis formation.


2014 ◽  
pp. n/a-n/a ◽  
Author(s):  
Dong-Joo Cheon ◽  
Ann E. Walts ◽  
Jessica A. Beach ◽  
Jenny Lester ◽  
John S. Bomalaski ◽  
...  

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