scholarly journals Expanding the structural analysis capabilities on an Orbitrap-based mass spectrometer for large macromolecular complexes

The Analyst ◽  
2018 ◽  
Vol 143 (1) ◽  
pp. 100-105 ◽  
Author(s):  
Kyle L. Fort ◽  
Michiel van de Waterbeemd ◽  
Dmitriy Boll ◽  
Maria Reinhardt-Szyba ◽  
Mikhail E. Belov ◽  
...  

Native mass spectrometry can provide insight into the structure of macromolecular biological systems.

2007 ◽  
Vol 556-557 ◽  
pp. 121-124
Author(s):  
Brian H. Ponczak ◽  
James D. Oliver ◽  
Soon Cho ◽  
Gary W. Rubloff

A quadrupole mass spectrometer unit was utilized to accurately detect the chemical species present inside a SiC CVD reactor growth chamber before, during, and after epitaxial deposition. The in-situ mass spectrometer has been able to confirm the presence of silane (SiH4) and propane (C3H8) decomposition products (eg. Si and CH4) that were predicted from chemical modelling, and give insight into specific reaction kinetics. Additionally, the mass spectrometer has positively detected trace amounts of oxygen, which has helped to identify process weaknesses and possible sources of vacuum leaks.


FEBS Journal ◽  
2019 ◽  
Vol 287 (6) ◽  
pp. 1247-1254
Author(s):  
Monita Muralidharan ◽  
Vijay Bhat ◽  
Amit Kumar Mandal

2018 ◽  
Vol 10 (2) ◽  
pp. 139-148 ◽  
Author(s):  
Huilin Li ◽  
Hong Hanh Nguyen ◽  
Rachel R. Ogorzalek Loo ◽  
Iain D. G. Campuzano ◽  
Joseph A. Loo

2020 ◽  
Vol 6 (4) ◽  
pp. 573-588 ◽  
Author(s):  
Shay Vimer ◽  
Gili Ben-Nissan ◽  
David Morgenstern ◽  
Fanindra Kumar-Deshmukh ◽  
Caley Polkinghorn ◽  
...  

Author(s):  
Elisabetta Boeri Erba ◽  
Luca Signor ◽  
Mizar F. Oliva ◽  
Fabienne Hans ◽  
Carlo Petosa

2018 ◽  
Vol 114 (3) ◽  
pp. 440a
Author(s):  
Zainab Ahdash ◽  
Andy M. Lau ◽  
Robert Thomas Byrne ◽  
Katja Lammens ◽  
Paula J. Booth ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Miranda P. Collier ◽  
Karen Betancourt Moreira ◽  
Kathy H. Li ◽  
Yu-Chan Chen ◽  
Daniel Itzhak ◽  
...  

AbstractThe eukaryotic chaperonin TRiC/CCT is a large ATP-dependent complex essential for cellular protein folding. Its subunit arrangement into two stacked eight-membered hetero-oligomeric rings is conserved from yeast to man. A recent breakthrough enables production of functional human TRiC (hTRiC) from insect cells. Here, we apply a suite of mass spectrometry techniques to characterize recombinant hTRiC. We find all subunits CCT1-8 are N-terminally processed by combinations of methionine excision and acetylation observed in native human TRiC. Dissociation by organic solvents yields primarily monomeric subunits with a small population of CCT dimers. Notably, some dimers feature non-canonical inter-subunit contacts absent in the initial hTRiC. This indicates individual CCT monomers can promiscuously re-assemble into dimers, and lack the information to assume the specific interface pairings in the holocomplex. CCT5 is consistently the most stable subunit and engages in the greatest number of non-canonical dimer pairings. These findings confirm physiologically relevant post-translational processing and function of recombinant hTRiC and offer quantitative insight into the relative stabilities of TRiC subunits and interfaces, a key step toward reconstructing its assembly mechanism. Our results also highlight the importance of assigning contacts identified by native mass spectrometry after solution dissociation as canonical or non-canonical when investigating multimeric assemblies.


2020 ◽  
pp. jbc.RA120.016342
Author(s):  
Harry C Tjondro ◽  
Julian Ugonotti ◽  
Rebeca Kawahara ◽  
Sayantani Chatterjee ◽  
Ian Loke ◽  
...  

Myeloperoxidase (MPO) plays essential roles in neutrophil-mediated immunity via the generation of reactive oxidation products. Complex carbohydrates decorate MPO at discrete sites, but their functional relevance remain elusive. To this end, we have characterised the structure-biosynthesis-activity relationship of neutrophil MPO (nMPO). Mass spectrometry demonstrated that nMPO carries both characteristic under-processed and hyper-truncated glycans. Occlusion of the Asn355/Asn391-glycosylation sites and the Asn323-/Asn483-glycans, located in the MPO dimerisation zone, was found to affect the local glycan processing, thereby providing a molecular basis of the site-specific nMPO glycosylation. Native mass spectrometry, mass photometry, and glycopeptide profiling revealed significant molecular complexity of diprotomeric nMPO arising from heterogeneous glycosylation, oxidation, chlorination and polypeptide truncation variants, and a previously unreported low-abundance monoprotomer. Longitudinal profiling of maturing, mature, granule-separated, and pathogen-stimulated neutrophils demonstrated that nMPO is dynamically expressed during granulopoiesis, unevenly distributed across granules and degranulated upon activation. We also show that proMPO-to-MPO maturation occurs during early/mid-stage granulopoiesis. While similar global MPO glycosylation was observed across conditions, the conserved Asn355-/Asn391-sites displayed elevated glycan hyper-truncation, which correlated with higher enzyme activities of MPO in distinct granule populations. Enzymatic trimming of the Asn355-/Asn391-glycans recapitulated the activity gain and showed that nMPO carrying hyper-truncated glycans at these positions exhibits increased thermal stability, polypeptide accessibility, and ceruloplasmin-mediated inhibition potential relative to native nMPO. Finally, molecular modelling revealed that hyper-truncated Asn355-glycans positioned in the MPO-ceruloplasmin interface are critical for uninterrupted inhibition. Here, through an innovative and comprehensive approach, we report novel functional roles of MPO glycans, providing new insight into neutrophil-mediated immunity.


Biochemistry ◽  
2018 ◽  
Vol 57 (11) ◽  
pp. 1685-1689 ◽  
Author(s):  
Agni F. M. Gavriilidou ◽  
Finn P. Holding ◽  
Daniel Mayer ◽  
Joseph E. Coyle ◽  
Dmitry B. Veprintsev ◽  
...  

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