Ypt1 and COPII vesicles act in autophagosome biogenesis and the early secretory pathway

2015 ◽  
Vol 43 (1) ◽  
pp. 92-96 ◽  
Author(s):  
Saralin Davis ◽  
Susan Ferro-Novick
Keyword(s):  
Coat Protein ◽  
Protein Complex ◽  
Intracellular Trafficking ◽  
Secretory Pathway ◽  
Cell Stress ◽  
Complex Ii ◽  
Early Secretory Pathway ◽  
Copii Vesicles ◽  
Established Role

The GTPase Ypt1, Rab1 in mammals functions on multiple intracellular trafficking pathways. Ypt1 has an established role on the early secretory pathway in targeting coat protein complex II (COPII) coated vesicles to the cis-Golgi. Additionally, Ypt1 functions during the initial stages of macroautophagy, a process of cellular degradation induced during periods of cell stress. In the present study, we discuss the role of Ypt1 and other secretory machinery during macroautophagy, highlighting commonalities between these two pathways.

scholarly journals Erv26p Directs Pro-Alkaline Phosphatase into Endoplasmic Reticulum–derived Coat Protein Complex II Transport Vesicles

2006 ◽  
Vol 17 (11) ◽  
pp. 4780-4789 ◽  
Author(s):  
Catherine A. Bue ◽  
Christine M. Bentivoglio ◽  
Charles Barlowe
Keyword(s):  
Alkaline Phosphatase ◽  
Endoplasmic Reticulum ◽  
Coat Protein ◽  
Membrane Protein ◽  
Protein Complex ◽  
Integral Membrane Protein ◽  
Secretory Proteins ◽  
Complex Ii ◽  
Transport Vesicles ◽  
Copii Vesicles

Secretory proteins are exported from the endoplasmic reticulum (ER) in transport vesicles formed by the coat protein complex II (COPII). We detected Erv26p as an integral membrane protein that was efficiently packaged into COPII vesicles and cycled between the ER and Golgi compartments. The erv26Δ mutant displayed a selective secretory defect in which the pro-form of vacuolar alkaline phosphatase (pro-ALP) accumulated in the ER, whereas other secretory proteins were transported at wild-type rates. In vitro budding experiments demonstrated that Erv26p was directly required for packaging of pro-ALP into COPII vesicles. Moreover, Erv26p was detected in a specific complex with pro-ALP when immunoprecipitated from detergent-solublized ER membranes. Based on these observations, we propose that Erv26p serves as a transmembrane adaptor to link specific secretory cargo to the COPII coat. Because ALP is a type II integral membrane protein in yeast, these findings imply that an additional class of secretory cargo relies on adaptor proteins for efficient export from the ER.

scholarly journals Novel Isotypic γ/ζ Subunits Reveal Three Coatomer Complexes in Mammals

2004 ◽  
Vol 24 (3) ◽  
pp. 1070-1080 ◽  
Author(s):  
Dominik Wegmann ◽  
Pablo Hess ◽  
Carola Baier ◽  
Felix T. Wieland ◽  
Constanze Reinhard
Keyword(s):  
Coat Protein ◽  
Secretory Pathway ◽  
Small Gtpase ◽  
Liver Cytosol ◽  
Early Secretory Pathway ◽  
Golgi Membranes ◽  
Secretory Transport ◽  
Adp Ribosylation Factor ◽  
Precise Role

ABSTRACT In early secretory transport, coat recruitment for the formation of coat protein I (COPI) vesicles involves binding to donor Golgi membranes of the small GTPase ADP-ribosylation factor 1 and subsequent attachment of the cytoplasmic heptameric complex coatomer. Various hypotheses exist as to the precise role of and possible routes taken by COPI vesicles in the mammalian cell. Here we report the ubiquitous expression of two novel isotypes of coatomer subunits γ- and ζ-COP that are incorporated into coatomer, and show that three isotypes exist of the complex defined by the subunit combinations γ1/ζ1, γ1/ζ2, and γ2/ζ1. In a liver cytosol, these forms make up the total coatomer in a ratio of about 2:1:2, respectively. The coatomer isotypes are located differentially within the early secretory pathway, and the γ2/ζ1 isotype is preferentially incorporated into COPI vesicles. A population of COPI vesicles was characterized that almost exclusively contains γ2/ζ1 coatomer. This existence of three structurally different forms of coatomer will need to be considered in future models of COPI-mediated transport.

scholarly journals TANGO1 and SEC12 are copackaged with procollagen I to facilitate the generation of large COPII carriers

2018 ◽  
Vol 115 (52) ◽  
pp. E12255-E12264 ◽  
Author(s):  
Lin Yuan ◽  
Samuel J. Kenny ◽  
Juliet Hemmati ◽  
Ke Xu ◽  
Randy Schekman
Keyword(s):  
Endoplasmic Reticulum ◽  
Coat Protein ◽  
Protein Complex ◽  
Coated Vesicles ◽  
Initiation Factor ◽  
Interacting Protein ◽  
Complex Ii ◽  
Transport Vesicles ◽  
Er Exit Sites ◽  
Copii Vesicles

Large coat protein complex II (COPII)-coated vesicles serve to convey the large cargo procollagen I (PC1) from the endoplasmic reticulum (ER). The link between large cargo in the lumen of the ER and modulation of the COPII machinery remains unresolved. TANGO1 is required for PC secretion and interacts with PC and COPII on opposite sides of the ER membrane, but evidence suggests that TANGO1 is retained in the ER, and not included in normal size (<100 nm) COPII vesicles. Here we show that TANGO1 is exported out of the ER in large COPII-coated PC1 carriers, and retrieved back to the ER by the retrograde coat, COPI, mediated by the C-terminal RDEL retrieval sequence of HSP47. TANGO1 is known to target the COPII initiation factor SEC12 to ER exit sites through an interacting protein, cTAGE5. SEC12 is important for the growth of COPII vesicles, but it is not sorted into small budded vesicles. We found both cTAGE5 and SEC12 were exported with TANGO1 in large COPII carriers. In contrast to its exclusion from small transport vesicles, SEC12 was particularly enriched around ER membranes and large COPII carriers that contained PC1. We constructed a split GFP system to recapitulate the targeting of SEC12 to PC1 via the luminal domain of TANGO1. The minimal targeting system enriched SEC12 around PC1 and generated large PC1 carriers. We conclude that TANGO1, cTAGE5, and SEC12 are copacked with PC1 into COPII carriers to increase the size of COPII, thus ensuring the capture of large cargo.

Tunnels for Protein Export from the Endoplasmic Reticulum

2021 ◽  
Vol 90 (1) ◽  
Author(s):  
I. Raote ◽  
V. Malhotra
Keyword(s):  
Endoplasmic Reticulum ◽  
Coat Protein ◽  
Protein Secretion ◽  
Secretory Pathway ◽  
Protein Export ◽  
Annual Review ◽  
Publication Date ◽  
Early Secretory Pathway ◽  
Copii Vesicles ◽  
Golgi Organization

The functions of coat protein complex II (COPII) coats in cargo packaging and the creation of vesicles at the endoplasmic reticulum are conserved in eukaryotic protein secretion. Standard COPII vesicles, however, cannot handle the secretion of metazoan-specific cargoes such as procollagens, apolipoproteins, and mucins. Metazoans have thus evolved modules centered on proteins like TANGO1 (transport and Golgi organization 1) to engage COPII coats and early secretory pathway membranes to engineer a novel mode of cargo export at the endoplasmic reticulum. Expected final online publication date for the Annual Review of Biochemistry, Volume 90 is June 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

scholarly journals Expression of Sar1b Enhances Chylomicron Assembly and Key Components of the Coat Protein Complex II System Driving Vesicle Budding

2011 ◽  
Vol 31 (11) ◽  
pp. 2692-2699 ◽  
Author(s):  
Emile Levy ◽  
Elodie Harmel ◽  
Martine Laville ◽  
Rocio Sanchez ◽  
Léa Emonnot ◽  
...  
Keyword(s):  
Coat Protein ◽  
Protein Complex ◽  
Vesicle Budding ◽  
Complex Ii ◽  
Coat Protein Complex

Peroxisomal membrane proteins are properly targeted to peroxisomes in the absence of COPI- and COPII-mediated vesicular transport

2001 ◽  
Vol 114 (11) ◽  
pp. 2199-2204 ◽  
Author(s):  
Tineke Voorn-Brouwer ◽  
Astrid Kragt ◽  
Henk F. Tabak ◽  
Ben Distel
Keyword(s):  
Endoplasmic Reticulum ◽  
Membrane Proteins ◽  
Secretory Pathway ◽  
Human Fibroblasts ◽  
Vesicle Transport ◽  
Peroxisome Biogenesis ◽  
Peroxisomal Membrane ◽  
Classic Model ◽  
Early Secretory Pathway

The classic model for peroxisome biogenesis states that new peroxisomes arise by the fission of pre-existing ones and that peroxisomal matrix and membrane proteins are recruited directly from the cytosol. Recent studies challenge this model and suggest that some peroxisomal membrane proteins might traffic via the endoplasmic reticulum to peroxisomes. We have studied the trafficking in human fibroblasts of three peroxisomal membrane proteins, Pex2p, Pex3p and Pex16p, all of which have been suggested to transit the endoplasmic reticulum before arriving in peroxisomes. Here, we show that targeting of these peroxisomal membrane proteins is not affected by inhibitors of COPI and COPII that block vesicle transport in the early secretory pathway. Moreover, we have obtained no evidence for the presence of these peroxisomal membrane proteins in compartments other than peroxisomes and demonstrate that COPI and COPII inhibitors do not affect peroxisome morphology or integrity. Together, these data fail to provide any evidence for a role of the endoplasmic reticulum in peroxisome biogenesis.

scholarly journals A VCP inhibitor substrate trapping approach (VISTA) enables proteomic profiling of endogenous ERAD substrates

2018 ◽  
Vol 29 (9) ◽  
pp. 1021-1030 ◽  
Author(s):  
Edmond Y. Huang ◽  
Milton To ◽  
Erica Tran ◽  
Lorraine T. Ador Dionisio ◽  
Hyejin J. Cho ◽  
...  
Keyword(s):  
Secretory Pathway ◽  
Carcinoma Cells ◽  
26S Proteasome ◽  
Proteomic Profiling ◽  
Aaa Atpase ◽  
Early Secretory Pathway ◽  
Lysine Residues ◽  
Discovery Method ◽  
Established Role ◽  
Human Hepatocellular Carcinoma Cells

Endoplasmic reticulum (ER)–associated degradation (ERAD) mediates the proteasomal clearance of proteins from the early secretory pathway. In this process, ubiquitinated substrates are extracted from membrane-embedded dislocation complexes by the AAA ATPase VCP and targeted to the cytosolic 26S proteasome. In addition to its well-established role in the degradation of misfolded proteins, ERAD also regulates the abundance of key proteins such as enzymes involved in cholesterol synthesis. However, due to the lack of generalizable methods, our understanding of the scope of proteins targeted by ERAD remains limited. To overcome this obstacle, we developed a VCP inhibitor substrate trapping approach (VISTA) to identify endogenous ERAD substrates. VISTA exploits the small-molecule VCP inhibitor CB5083 to trap ERAD substrates in a membrane-associated, ubiquitinated form. This strategy, coupled with quantitative ubiquitin proteomics, identified previously validated (e.g., ApoB100, Insig2, and DHCR7) and novel (e.g., SCD1 and RNF5) ERAD substrates in cultured human hepatocellular carcinoma cells. Moreover, our results indicate that RNF5 autoubiquitination on multiple lysine residues targets it for ubiquitin and VCP-­dependent clearance. Thus, VISTA provides a generalizable discovery method that expands the available toolbox of strategies to elucidate the ERAD substrate landscape.

scholarly journals Sec16 influences transitional ER sites by regulating rather than organizing COPII

2013 ◽  
Vol 24 (21) ◽  
pp. 3406-3419 ◽  
Author(s):  
Nike Bharucha ◽  
Yang Liu ◽  
Effrosyni Papanikou ◽  
Conor McMahon ◽  
Masatoshi Esaki ◽  
...  
Keyword(s):  
Endoplasmic Reticulum ◽  
Coat Protein ◽  
Pichia Pastoris ◽  
Protein Complex ◽  
The Other ◽  
Yeast Pichia Pastoris ◽  
Functional Regions ◽  
Conserved Domain ◽  
Copii Vesicles ◽  
Negative Regulatory Role

During the budding of coat protein complex II (COPII) vesicles from transitional endoplasmic reticulum (tER) sites, Sec16 has been proposed to play two distinct roles: negatively regulating COPII turnover and organizing COPII assembly at tER sites. We tested these ideas using the yeast Pichia pastoris. Redistribution of Sec16 to the cytosol accelerates tER dynamics, supporting a negative regulatory role for Sec16. To evaluate a possible COPII organization role, we dissected the functional regions of Sec16. The central conserved domain, which had been implicated in coordinating COPII assembly, is actually dispensable for normal tER structure. An upstream conserved region (UCR) localizes Sec16 to tER sites. The UCR binds COPII components, and removal of COPII from tER sites also removes Sec16, indicating that COPII recruits Sec16 rather than the other way around. We propose that Sec16 does not in fact organize COPII. Instead, regulation of COPII turnover can account for the influence of Sec16 on tER sites.

scholarly journals Nm23H2 Facilitates Coat Protein Complex II Assembly and Endoplasmic Reticulum Export in Mammalian Cells

2005 ◽  
Vol 16 (2) ◽  
pp. 835-848 ◽  
Author(s):  
Lori Kapetanovich ◽  
Cassandra Baughman ◽  
Tina H. Lee
Keyword(s):  
Endoplasmic Reticulum ◽  
Coat Protein ◽  
Protein Complex ◽  
Mammalian Cells ◽  
Complex Ii ◽  
Permeabilized Cells ◽  
Er Export ◽  
Coat Protein Complex

The cytosolic coat protein complex II (COPII) mediates vesicle formation from the endoplasmic reticulum (ER) and is essential for ER-to-Golgi trafficking. The minimal machinery for COPII assembly is well established. However, additional factors may regulate the process in mammalian cells. Here, a morphological COPII assembly assay using purified COPII proteins and digitonin-permeabilized cells has been applied to demonstrate a role for a novel component of the COPII assembly pathway. The factor was purified and identified by mass spectrometry as Nm23H2, one of eight isoforms of nucleoside diphosphate kinase in mammalian cells. Importantly, recombinant Nm23H2, as well as a catalytically inactive version, promoted COPII assembly in vitro, suggesting a noncatalytic role for Nm23H2. Consistent with a function for Nm23H2 in ER export, Nm23H2 localized to a reticular network that also stained for the ER marker calnexin. Finally, an in vivo role for Nm23H2 in COPII assembly was confirmed by isoform-specific knockdown of Nm23H2 by using short interfering RNA. Knockdown of Nm23H2, but not its most closely related isoform Nm23H1, resulted in diminished COPII assembly at steady state and reduced kinetics of ER export. These results strongly suggest a previously unappreciated role for Nm23H2 in mammalian ER export.

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