Some restrictions on the existence of second order limit language

2015 ◽  
Author(s):  
Muhammad Azrin Ahmad ◽  
Nor Haniza Sarmin ◽  
Yuhani Yusof ◽  
Wan Heng Fong
Keyword(s):  
2014 ◽  
Author(s):  
Muhammad Azrin Ahmad ◽  
Nor Haniza Sarmin ◽  
Fong Wan Heng ◽  
Yuhani Yusof
Keyword(s):  

2014 ◽  
Vol 72 (1) ◽  
Author(s):  
Muhammad Azrin Ahmad ◽  
Nor Haniza Sarmin ◽  
Wan Heng Fong ◽  
Yuhani Yusof

DNA splicing process is a study on the recombinant behavior of double-stranded DNA molecules with the existence of restriction enzyme and ligase. Head introduced the first mathematical model of splicing systems by using the relation of informational macromolecules and formal language theory. In addition, a few laboratory experiments have been conducted in order to verify certain types of splicing language called inert/adult, transient and limit language. Previously, researchers have focused on those types of splicing languages.   Recently, an extension of limit languages namely second order limit language has been introduced. In this paper, the difference between second order limit languages and non-second order limit languages is depicted in some examples. Then, the formations of second order limit language in Yusof-Goode splicing system are investigated. 


2020 ◽  
Author(s):  
Muhammad Azrin Ahmad ◽  
Nor Haniza Sarmin ◽  
Wan Heng Fong ◽  
Yuhani Yusof ◽  
Noraziah Adzhar

2014 ◽  
Vol 71 (5) ◽  
Author(s):  
Muhammad Azrin Ahmad ◽  
Nor Haniza Sarmin ◽  
Wan Heng Fong ◽  
Yuhani Yusof

Splicing system, which is an abstraction of operations on DNA molecules, can be modelled mathematically under the framework of formal language theory and informational macromolecules. The recombinant behavior of the set of double-stranded DNA molecules under the influence of restriction enzyme and ligase further lead to the cut and paste phenomenon in splicing system. The theoretical study of splicing language has contributed to a new type of splicing language known as a second order limit language, which is an extension of limit language. Some types of splicing system can produce second order limit language. Y-G splicing system is chosen among other models to model the DNA splicing process as this model preserves the biological traits and presents the transparent behavior of the DNA splicing process. In this paper, the relation between second order limit language with simple splicing and semi-simple splicing system are presented.


Author(s):  
W. L. Bell

Disappearance voltages for second order reflections can be determined experimentally in a variety of ways. The more subjective methods, such as Kikuchi line disappearance and bend contour imaging, involve comparing a series of diffraction patterns or micrographs taken at intervals throughout the disappearance range and selecting that voltage which gives the strongest disappearance effect. The estimated accuracies of these methods are both to within 10 kV, or about 2-4%, of the true disappearance voltage, which is quite sufficient for using these voltages in further calculations. However, it is the necessity of determining this information by comparisons of exposed plates rather than while operating the microscope that detracts from the immediate usefulness of these methods if there is reason to perform experiments at an unknown disappearance voltage.The convergent beam technique for determining the disappearance voltage has been found to be a highly objective method when it is applicable, i.e. when reasonable crystal perfection exists and an area of uniform thickness can be found. The criterion for determining this voltage is that the central maximum disappear from the rocking curve for the second order spot.


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