scholarly journals Genetic characterisation of non-descript cattle populations in communal areas of South Africa

2021 ◽  
Vol 61 (1) ◽  
pp. 84
Author(s):  
M. D. Mamogobo ◽  
N. O. Mapholi ◽  
K. A. Nephawe ◽  
T. L. Nedambale ◽  
T. J. Mpofu ◽  
...  

Context Indigenous cattle breeds represent an important genetic resource for livelihood of communal-area inhabitants. Indigenous breeds have the ability to withstand harsh climatic conditions, can adapt genetically to poor-quality forages and are resistant to parasites and diseases. These unique traits possessed by indigenous breeds are under threat because of unrestrained crossing with exotic commercial breeds, and this can lead to total loss of a breed. Aims The study was conducted to assess the genetic diversity and population structure of South African non-descript communal beef cattle populations by using 25 microsatellite markers. Methods Unrelated and non-descript animals (n = 150) were sampled from communal areas from five (5) provinces of South Africa, namely, Eastern Cape, KwaZulu–Natal, Limpopo, Mpumalanga and the North West, with 30 samples per breed taken. Six (6) known cattle breeds (n = 180) were used as a reference population. This included Angus, Afrikaner, Bonsmara, Brahman, Drakensberger and the Nguni, with 30 samples per breed. Key results High level of genetic diversity was found across the five non-descript populations, with an average heterozygosity of 75%. The Limpopo population was found to be the most diverse population, with the highest average number of alleles (8.5) and heterozygosity (ranging between observed heterozygosity of 70% and expected heterozygosity of 79%). STRUCTURE software assigned populations (2 ≤ K ≤ 20), with the most probable cluster being at K = 7. The Eastern Cape, KwaZulu–Natal and Limpopo populations had genetic material similar to those possessed by the Nguni and Bonsmara reference populations. Conclusions Results from the study showed that most genetic differentiation occurred within populations rather than among populations, and this might be due to the fact that there is no selection for or against any specific production trait expressed in the populations. Implications The obtained information will serve as a baseline for the development and implementation of sound breeding programs that will assist in controlling the gene flow, so as to lower the possible genetic dilution of the currently available genetic material.

Zootaxa ◽  
2019 ◽  
Vol 4574 (1) ◽  
pp. 1
Author(s):  
ROMAN BOROVEC ◽  
JIŘÍ SKUHROVEC

The genus Pentatrachyphloeus Voss, 1974, with two known species, is redefined and compared with related genera. An additional thirty seven new species are described here: P. andersoni sp. nov. (South Africa, Mpumalanga); P. baumi sp. nov. (South Africa, Gauteng); P. brevithorax sp. nov. (South Africa, KwaZulu-Natal); P. bufo sp. nov. (South Africa, Mpumalanga); P. endroedyi sp. nov. (South Africa, Mpumalanga); P. exiguus sp. nov. (South Africa, Mpumalanga); P. frici sp. nov. (South Africa, Limpopo); P. grobbelaarae sp. nov. (South Africa, KwaZulu-Natal); P. hanzelkai sp. nov. (South Africa, KwaZulu-Natal); P. holubi sp. nov. (South Africa, Mpumalanga); P. howdenae sp. nov. (South Africa, Mpumalanga); P. hystrix sp. nov. (South Africa, Mpumalanga); P. insignicornis sp. nov. (South Africa, KwaZulu-Natal); P. kalalovae sp. nov. (South Africa, Gauteng); P. kuscheli sp. nov. (South Africa, KwaZulu-Natal); P. laevis sp. nov. (South Africa, Mpumalanga); P. lajumensis sp. nov. (South Africa, Limpopo); P. leleupi sp. nov. (Zimbabwe, Manica); P. lesothoensis sp. nov. (Lesotho, Qacha’s Nek); P. machulkai sp. nov. (South Africa, Free State); P. marshalli sp. nov. (South Africa, KwaZulu-Natal); P. muellerae sp. nov. (South Africa, Mpumalanga); P. musili sp. nov. (South Africa, Limpopo); P. ntinini sp. nov. (South Africa, KwaZulu-Natal); P. oberprieleri sp. nov. (South Africa, Gauteng, North West); P. pavlicai sp. nov. (South Africa, Free State); P. rudyardi sp. nov. (South Africa, Limpopo); P. schoemani sp. nov. (South Africa, Limpopo); P. soutpansbergensis sp. nov. (South Africa, Limpopo); P. spinimanus sp. nov. (South Africa, Mpumalanga); P. stingli sp. nov. (South Africa, Limpopo); P. tenuicollis sp. nov. (South Africa, Mpumalanga); P. tuberculatus sp. nov. (South Africa, Mpumalanga); P. vavrai sp. nov. (South Africa, Eastern Cape); P. vossi sp. nov. (South Africa, Mpumalanga); P. vrazi sp. nov. (South Africa, Limpopo) and P. zikmundi sp. nov. (South Africa, Free State). All of the species are keyed and illustrated; ecological information is presented only where available. All species seem to be very localised, being known only from one or only a very limited number of localities. Immature stages or host plants are not known for any of the species. The species are distributed as follows: South Africa: Mpumalanga (13), Limpopo (8), KwaZulu-Natal (7), Free State (3), Gauteng (3), Eastern Cape (3), North West (1); Lesotho: Qacha’s Nek (1) and Zimbabwe: Manica (1). 


Author(s):  
James R. Barnacle ◽  
Oliver Johnson ◽  
Ian Couper

Background: Many European-trained doctors (ETDs) recruited to work in rural district hospitals in South Africa have insufficient generalist competencies for the range of practice required. Africa Health Placements recruits ETDs to work in rural hospitals in Africa. Many of these doctors feel inadequately prepared. The Stellenbosch University Ukwanda Centre for Rural Health is launching a Postgraduate Diploma in Rural Medicine to help prepare doctors for such work.Aim: To determine the competencies gap for ETDs working in rural district hospitals in South Africa to inform the curriculum of the PG Dip (Rural Medicine).Setting: Rural district hospitals in South Africa.Methods: Nine hospitals in the Eastern Cape, KwaZulu-Natal and Mpumalanga were purposefully selected by Africa Health Placements as receiving ETDs. An online survey was developed asking about the most important competencies and weaknesses for ETDs when working rurally. The clinical manager and any ETDs currently working in each hospital were invited to complete the survey.Results: Surveys were completed by 19 ETDs and five clinical managers. The top clinical competencies in relation to 10 specific domains were identified. The results also indicate broader competencies required, specific skills gaps, the strengths that ETDs bring to South Africa and how ETDs prepare themselves for working in this context.Conclusion: This study identifies the important competency gaps among ETDs and provides useful direction for the diploma and other future training initiatives. The diploma faculty must reflect on these findings and ensure the curriculum is aligned with these gaps.


2020 ◽  
pp. 1-16
Author(s):  
S. THOBEKA GUMEDE ◽  
DAVID A. EHLERS SMITH ◽  
YVETTE C. EHLERS SMITH ◽  
SAMUKELISIWE P. NGCOBO ◽  
MBALENHLE T. SOSIBO ◽  
...  

Summary Establishing the specific habitat requirements of forest specialists in fragmented natural habitats is vital for their conservation. We used camera-trap surveys and microhabitat-scale covariates to assess the habitat requirements, probability of occupancy and detection of two terrestrial forest specialist species, the Orange Ground-thrush Geokichla gurneyi and the Lemon Dove Aplopelia larvata during the breeding and non-breeding seasons of 2018–2019 in selected Southern Mistbelt Forests of KwaZulu-Natal and the Eastern Cape, South Africa. A series of camera-trap surveys over 21 days were conducted in conjunction with surveys of microhabitat structural covariates. During the wet season, percentage of leaf litter cover, short grass cover, short herb cover, tall herb cover and saplings 0–2 m, stem density of trees 6–10 m and trees 16–20 m were significant structural covariates for influencing Lemon Dove occupancy. In the dry season, stem density of 2–5 m and 10–15 m trees, percentage tall herb cover, short herb cover and 0–2 m saplings were significant covariates influencing Lemon Dove occupancy. Stem density of trees 2–5 m and 11–15 m, percentage of short grass cover and short herb cover were important site covariates influencing Orange Ground-thrush occupancy in the wet season. Our study highlighted the importance of a diverse habitat structure for both forest species. A high density of tall/mature trees was an essential microhabitat covariate, particularly for sufficient cover and food for these ground-dwelling birds. Avian forest specialists play a vital role in providing ecosystem services perpetuating forest habitat functioning. Conservation of the natural heterogeneity of their habitat is integral to management plans to prevent the decline of such species.


Author(s):  
Б.Л. Пхарое ◽  
А.Н. Евдокимов

Северо-западный регион ЮАР до недавнего времени не являлся промышленно марганценосным. Однако результаты изучения последних лет дают основание думать, что здесь могут быть залежи марганцевых руд. Марганцевое оруденение в этом регионе встречается в виде марганцевых конкреций, порошкообразного марганцевого вада и марганцевых корок в коре выветривания. Марганцевые конкреции приурочены к аллювиальной части «Westwits alluvium» рудного разреза и марганцевый вад накоплялся в карстовых структурах, образовавшихся в результате приповерхностного выветривания, выщелачивания и растворения подстилающих марганценосных неоархейских доломитов. Предполагается два потенциальных источника марганца: первый расположен непосредственно под рудным телом, а второй – на существенном удалении от него. Если первый источник рудного вещества поставлял марганец из подстилающих доломитов в процессе их выветривания, то второй вариант подразумевает существенный перенос металла из неизвестных коренных источников, расположенных на значительном удалении от области рудонакопления. Таким образом, для решения этого вопроса, необходимо провести экспериментальные исследования, изучающие природу, минералогию и источник сноса терригенных отложений «вмещающих материалов» верхнего рудного разреза. Цель работы – уточнить природу марганценосных терригенных залежей «Westwits alluvium» и, что самое важное, определить их коренной источник поступления и собственно минеральный состав. Методики исследования включали: петрографическое описание пород, геохимические анализы методами XRF и SEM, подсчеты объемного состава детритовых минералов и анализ дискриминационных диаграмм. Результаты. В результате проведенных исследований было установлено, что терригенные зёрна в основном представлены кварцем. Содержание полевых шпатов, минералов цемента и глинистых минералов не более 20 %. Использована классификация составов терригенного материала, основанная на подсчете в объемных процентах зерен кварца, полевого шпата, обломочных зерен других пород (вулканических, магматических и метаморфических пород), слюды и др. По этим данным были определены вероятные источники сноса, которыми являются породы Рэнд-Антиклинального хребта, расположенного к югу от изучаемого региона, а также архейские граниты, гнейсы и мафические-ультрамафические породы Каапваальского кратона. Осадконакопление происходило в низменной равнине с тропическим умеренно влажным и субгумидным климатом. Здесь, при повышенном рН воды происходило интенсивное выщелачивание пород и замещение детритовых зерен разного минерального состава диоксидом марганца. Ключевые слова: марганцовистый аллювий, третичный, терригенные отложения, Каапваальский кратон, Южная Африка The North-West region of the Republic of South Africa was previously not considered to constitute of manganese mineralization of industrial value. However, recently published articles indicated the presence of secondary manganese mineralization in the weathering crust, underlain by the manganiferous Neoarchean dolomites. Manganese mineralization in this region occurs in the form of manganese nodules, powdered manganese wad, and manganese crusts. Manganese nodules are confined to the alluvial part of the ore section known as the «Westwits alluvium» and manganese wad is accumulated in karstic structures formed as a result of near-surface weathering, leaching, and dissolution of underlying manganese-bearing Neoarchean dolomites. Two potential sources of manganese are assumed: the first relates to the dolomites which are located directly under the ore body, and the second relates to the source areas of terrigenous deposits. If the first hypothesis suggests that manganese ore substances were supplied from the underlying dolomites during their weathering, the second option then implies a significant transfer of metal from unknown root sources located at a considerable distance from the area of ore accumulation. Thus, it is necessary to conduct petrographic study to reconstruct their source regions and understand the close relations with Mn mineralization. Aim is to clarify the nature of the manganese-bearing terrigenous deposits «Westwits alluvium» and, most importantly, to determine their root source of supply and the actual mineral composition. Methodology of study includes mainly: petrographic study of rocks, geochemical analyses with the use of XRF and SEM methods, modal compositional analysis of the detrital minerals, and analysis of discrimination diagrams. Results. As a result of the conducted research, it was found that terrigenous grains consist mainly of detrital quartz grains. The content of feldspars, cement minerals and clay minerals seldom exceeds 20 %. The classification of terrigenous material based on the calculation of the volumetric percentage of the detrital framework grains: quartz, feldspar, clastic grains of other rocks types (volcanic, igneous and metamorphic rocks), mica, indicated probable source areas of the terrigenous sediments. These include metasedimentary rocks of the Rand Anticline Ridge which is located south of the studied region, and Archean granites, gneisses, and mafic-ultramafic rocks of the Kaapvaal Craton. In the basin of deposition, sedimentation occurred in a lowland plain within tropical region, characterized by moderately humid and sub-humid climatic conditions. These conditions, combined with oxidation and increased pH of the basin waters, contributed to the replacement of detrital grains with manganese dioxide


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