9. DEVELOPMENT AND VALIDATION OF A NOVEL GEL-BASED URINE TRANSPORT SYSTEM FOR USE IN CHLAMYDIA TRACHOMATIS PCR BASED DIAGNOSIS

Sexual Health ◽  
2007 ◽  
Vol 4 (4) ◽  
pp. 287
Author(s):  
S. Bialasiewicz

Background: Chlamydia trachomatis infection rates have increased within Australia over the past several years, including persistently high incidences in known risk groups. The development of novel C. trachomatis detection methods which can be self-collected and mailed in a plain envelope presents significant opportunities for increasing access to urine testing across Australia, particularly those who are geographically or socially isolated and have limited or impeded access to mainstream health services. Aim: The purpose of the study was to develop a urine transportation system which retains comparable sensitivity to standard sampling methods, is easy and safe to use by the average person within a home setting, and which complies with regulations concerning the transport of biological specimen through regular mail. Results/Discussion: An expanding-matrix based method was developed in which a small amount of urine is applied to a dry mixture of a super absorbent polymer and nucleic acid stabiliser, yielding a dry gel. The gel can then be subsequently treated in the diagnostic laboratory to release the reconstituted urine, from which nucleic acid can be extracted using standard methods. Once extracted, the sample can be utilised in a nucleic acid amplification based C. trachomatis diagnostic assay. The clinical sensitivity of the gel-matrix was found to be comparable to that of standard urine transport methods. The applicability of the gel for use by the public in a home collection setting was deemed appropriate due to the non-toxic nature of the matrix materials, ease of use, and the basic packing and postage requirements. The dry gel form of the urine and packaging complied with Australia Post standard postage requirements. Results of the initial development and validation of the gel matrix will be presented.

1995 ◽  
Vol 58 (12) ◽  
pp. 1357-1362 ◽  
Author(s):  
LEE-ANN JAYKUS ◽  
RICARDO DE LEON ◽  
MARK D. SOBSEY

Detection of enteric virus contamination of shellfish is limited by current methodology, which is time-consuming, tedious, and lacking in sensitivity due to reliance on cell culture infectivity. Alternative detection methods based on nucleic acid amplification have been hampered by high sample volumes and the presence of enzymatic inhibitors. The goal of this study was to develop methods to purify and concentrate intact virions from oyster extracts to a volume and quality compatible with viral genomic nucleic acid amplification by reverse transcriptase-polymerase chain reaction (RT-PCR). Fifty-gram oyster samples were homogenized and processed by standard adsorption-elution precipitation methodology and then seeded with 105 PFU of poliovirus 1 (PV1) or hepatitis A virus (HAV). Seeded viruses were concentrated by fluorocarbon extraction, polyethylene glycol (PEG) precipitation, chloroform extraction, and cetyltrimethyl ammonium bromide (CTAB) precipitation to a volume of 100 μl with removal of RT-PCR inhibitors. Virus recovery after elution of PEG precipitates was 50% for PVI and IS to 20% for HAV as evaluted by cell culture infectivity. The CTAB precipitation step yielded a concentrated sample which was directly compatible with RT-PCR reactions and capable of detecting about 100 placque=forming units (PFU) of PVl or HAV. When 50-g oyster extracts were seeded and processed by the entire concentration and purification scheme, direct RT-PCR detection of viral genomic RNA was possible at initial inoculum levels of 104 PFU of HAV and 103 PFU of PV1, with recoveries of 1 to 5% of seeded viruses.


2015 ◽  
Vol 7 (6) ◽  
pp. 2258-2263 ◽  
Author(s):  
Hui-Ling Chen ◽  
Meng-Meng Guo ◽  
Hao Tang ◽  
Zhan Wu ◽  
Li-Juan Tang ◽  
...  

This review traces the basic principles of several nucleic acid amplification-based microRNA detection methods that have been developed in recent three years.


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