scholarly journals Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

2013 ◽  
Vol 110 (8) ◽  
pp. 2876-2881 ◽  
Author(s):  
A. A. Sigova ◽  
A. C. Mullen ◽  
B. Molinie ◽  
S. Gupta ◽  
D. A. Orlando ◽  
...  
PLoS ONE ◽  
2018 ◽  
Vol 13 (1) ◽  
pp. e0191682 ◽  
Author(s):  
Maria Winzi ◽  
Nuria Casas Vila ◽  
Maciej Paszkowski-Rogacz ◽  
Li Ding ◽  
Svenja Noack ◽  
...  

2017 ◽  
Vol 9 (1) ◽  
pp. 108-121 ◽  
Author(s):  
Keriayn N. Smith ◽  
Joshua Starmer ◽  
Sarah C. Miller ◽  
Praveen Sethupathy ◽  
Terry Magnuson

Cell Reports ◽  
2016 ◽  
Vol 17 (2) ◽  
pp. 353-365 ◽  
Author(s):  
Kaveh Daneshvar ◽  
Joshua V. Pondick ◽  
Byeong-Moo Kim ◽  
Chan Zhou ◽  
Samuel R. York ◽  
...  

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Ya-Pu Li ◽  
Fei-Fei Duan ◽  
Yu-Ting Zhao ◽  
Kai-Li Gu ◽  
Le-Qi Liao ◽  
...  

2016 ◽  
Vol 2016 ◽  
pp. 1-17 ◽  
Author(s):  
Irma Virant-Klun ◽  
Anders Ståhlberg ◽  
Mikael Kubista ◽  
Thomas Skutella

MicroRNAs are a family of naturally occurring small noncoding RNA molecules that play an important regulatory role in gene expression. They are suggested to regulate a large proportion of protein encoding genes by mediating the translational suppression and posttranscriptional control of gene expression. Recent findings show that microRNAs are emerging as important regulators of cellular differentiation and dedifferentiation, and are deeply involved in developmental processes including human preimplantation development. They keep a balance between pluripotency and differentiation in the embryo and embryonic stem cells. Moreover, it became evident that dysregulation of microRNA expression may play a fundamental role in progression and dissemination of different cancers including ovarian cancer. The interest is still increased by the discovery of exosomes, that is, cell-derived vesicles, which can carry different proteins but also microRNAs between different cells and are involved in cell-to-cell communication. MicroRNAs, together with exosomes, have a great potential to be used for prognosis, therapy, and biomarkers of different diseases including infertility. The aim of this review paper is to summarize the existent knowledge on microRNAs related to female fertility and cancer: from primordial germ cells and ovarian function, germinal stem cells, oocytes, and embryos to embryonic stem cells.


2019 ◽  
Vol 14 (3) ◽  
pp. 259-267
Author(s):  
Jian Zhu ◽  
Yitian Wang ◽  
Wei Yu ◽  
Kaishun Xia ◽  
Yuluan Huang ◽  
...  

Background:Long suspected as transcriptional noise, recently recognized, long non-coding RNAs (lncRNAs) are emerging as an indicator, biomarker and therapy target in the physiologic and pathologic process. Mesenchymal stem cells and embryonic stem cells are important source for normal and therapeutic tissue repair. However, the mechanism of stem cell differentiation is not completely understood. Research on lncRNAs may provide novel insights into the mechanism of differentiation process of the stem cell which is important for the application of stem cell therapy. The lncRNAs field is still very young, new insights into lncRNAs function are emerging to a greater understanding of biological processes. Objective: In this review, we summarize the recent researches studying lncRNAs and illustrate how they act in the differentiation of the mesenchymal stem cells and embryonic stem cells, and discuss some future directions in this field. Results: Numerous lncRNAs were differentially expressed during differentiation of mesenchymal stem cells and embryonic stem cells. LncRNAs were able to regulate the differentiation processes through epigenetic regulation, transcription regulation and post-transcription regulation. Conclusion: LncRNAs are involved in the differentiation process of mesenchymal stem cells and embryonic stem cells, and they could become promising indicator, biomarker and therapeutic targets in the physiologic and pathologic process. However, the mechanisms of the role of lncRNAs still require further investigation.


2015 ◽  
Vol 35 (14) ◽  
pp. 2436-2447 ◽  
Author(s):  
Friedemann Loos ◽  
Agnese Loda ◽  
Louise van Wijk ◽  
J. Anton Grootegoed ◽  
Joost Gribnau

Genome-wide gene expression studies have indicated that the eukaryotic genome contains many gene pairs showing overlapping sense and antisense transcription. Regulation of these coding and/or noncoding gene pairs involves intricate regulatory mechanisms. In the present study, we utilized an enhanced green fluorescent protein (EGFP)-tagged reporter plasmidcislinked to a doxycycline-inducible antisense promoter, generating antisense transcription that fully overlapsEGFP, to study the mechanism and dynamics of gene silencing after induction of noncoding antisense transcription in undifferentiated and differentiating mouse embryonic stem cells (ESCs). We found thatEGFPsilencing is reversible in ESCs but is locked into a stable state upon ESC differentiation. Reversible silencing in ESCs is chromatin dependent and is associated with accumulation of trimethylated lysine 36 on histone H3 (H3K36me3) at theEGFPpromoter region. In differentiating ESCs, antisense transcription-induced accumulation of H3K36me3 was associated with an increase in CpG methylation at theEGFPpromoter. Repression of the sense promoter was affected by small-molecule inhibitors which interfere with DNA methylation and histone demethylation pathways. Our results indicate a general mechanism for silencing of fully overlapping sense-antisense gene pairs involving antisense transcription-induced accumulation of H3K36me3 at the sense promoter, resulting in reversible silencing of the sense partner, which is stabilized during ESC differentiation by CpG methylation.


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