scholarly journals Serpin-derived Peptide Substrates for Investigating the Substrate Specificity of Human Tissue Kallikreins hK1 and hK2

1997 ◽  
Vol 272 (47) ◽  
pp. 29590-29595 ◽  
Author(s):  
Luc Bourgeois ◽  
Michèle Brillard-Bourdet ◽  
David Deperthes ◽  
Maria A. Juliano ◽  
Luiz Juliano ◽  
...  
2019 ◽  
Vol 401 (1) ◽  
pp. 165-182 ◽  
Author(s):  
Shiyu Chen ◽  
Joshua J. Yim ◽  
Matthew Bogyo

Abstract Proteases are regulators of diverse biological pathways including protein catabolism, antigen processing and inflammation, as well as various disease conditions, such as malignant metastasis, viral infection and parasite invasion. The identification of substrates of a given protease is essential to understand its function and this information can also aid in the design of specific inhibitors and active site probes. However, the diversity of putative protein and peptide substrates makes connecting a protease to its downstream substrates technically difficult and time-consuming. To address this challenge in protease research, a range of methods have been developed to identify natural protein substrates as well as map the overall substrate specificity patterns of proteases. In this review, we highlight recent examples of both synthetic and biological methods that are being used to define the substrate specificity of protease so that new protease-specific tools and therapeutic agents can be developed.


2008 ◽  
Vol 416 (1) ◽  
pp. 109-116 ◽  
Author(s):  
Yoshikuni Goto ◽  
Hiroe Tanji ◽  
Akira Hattori ◽  
Masafumi Tsujimoto

ERAP-1 (endoplasmic-reticulum aminopeptidase-1) is a multifunctional enzyme with roles in the regulation of blood pressure, angiogenesis and the presentation of antigens to MHC class I molecules. Whereas the enzyme shows restricted specificity toward synthetic substrates, its substrate specificity toward natural peptides is rather broad. Because of the pathophysiological significance of ERAP-1, it is important to elucidate the molecular basis of its enzymatic action. In the present study we used site-directed mutagenesis to identify residues affecting the substrate specificity of human ERAP-1 and identified Gln181 as important for enzymatic activity and substrate specificity. Replacement of Gln181 by aspartic acid resulted in a significant change in substrate specificity, with Q181D ERAP-1 showing a preference for basic amino acids. In addition, Q181D ERAP-1 cleaved natural peptides possessing a basic amino acid at the N-terminal end more efficiently than did the wild-type enzyme, whereas its cleavage of peptides with a non-basic amino acid was significantly reduced. Another mutant enzyme, Q181E, also revealed some preference for peptides with a basic N-terminal amino acid, although it had little hydrolytic activity toward the synthetic peptides tested. Other mutant enzymes, including Q181N and Q181A ERAP-1s, revealed little enzymatic activity toward synthetic or peptide substrates. These results indicate that Gln181 is critical for the enzymatic activity and substrate specificity of ERAP-1.


2015 ◽  
Vol 35 (3) ◽  
Author(s):  
Chonticha Saisawang ◽  
Pornpan Sillapee ◽  
Kwanhathai Sinsirimongkol ◽  
Sukathida Ubol ◽  
Duncan R. Smith ◽  
...  

The protease role of alphavirus nsP2 is critical for virus replication as only the virus protease processes the viral non-structural polypeptide. We show chikungunya nsP2 protease possesses different substrate specificity to the canonical alphavirus nsP2 polyprotein cleavage specificity.


1988 ◽  
Vol 52 (9) ◽  
pp. 2351-2353
Author(s):  
Hideyuki Kobayashi ◽  
Yang Won Park ◽  
Masae Kaneda ◽  
Isao Kusakabe ◽  
Shigeki Yoshida ◽  
...  

2020 ◽  
Vol 21 (22) ◽  
pp. 8687
Author(s):  
Javier Garcia-Pardo ◽  
Sebastian Tanco ◽  
Maria C. Garcia-Guerrero ◽  
Sayani Dasgupta ◽  
Francesc Xavier Avilés ◽  
...  

Metallocarboxypeptidase Z (CPZ) is a secreted enzyme that is distinguished from all other members of the M14 metallocarboxypeptidase family by the presence of an N-terminal cysteine-rich Frizzled-like (Fz) domain that binds Wnt proteins. Here, we present a comprehensive analysis of the enzymatic properties and substrate specificity of human CPZ. To investigate the enzymatic properties, we employed dansylated peptide substrates. For substrate specificity profiling, we generated two different large peptide libraries and employed isotopic labeling and quantitative mass spectrometry to study the substrate preference of this enzyme. Our findings revealed that CPZ has a strict requirement for substrates with C-terminal Arg or Lys at the P1′ position. For the P1 position, CPZ was found to display specificity towards substrates with basic, small hydrophobic, or polar uncharged side chains. Deletion of the Fz domain did not affect CPZ activity as a carboxypeptidase. Finally, we modeled the structure of the Fz and catalytic domains of CPZ. Taken together, these studies provide the molecular elucidation of substrate recognition and specificity of the CPZ catalytic domain, as well as important insights into how the Fz domain binds Wnt proteins to modulate their functions.


10.1038/72642 ◽  
2000 ◽  
Vol 18 (2) ◽  
pp. 187-193 ◽  
Author(s):  
Bradley J. Backes ◽  
Jennifer L. Harris ◽  
Francesco Leonetti ◽  
Charles S. Craik ◽  
Jonathan A. Ellman

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