Vitamin K-dependent carboxylase: Requirements for carboxylation of soluble peptide substrates and substrate specificity

1979 ◽  
Vol 86 (3) ◽  
pp. 500-507 ◽  
Author(s):  
J.W. Suttie ◽  
S.R. Lehrman ◽  
L.O. Geweke ◽  
J.M. Hageman ◽  
D.H. Rich
2019 ◽  
Vol 401 (1) ◽  
pp. 165-182 ◽  
Author(s):  
Shiyu Chen ◽  
Joshua J. Yim ◽  
Matthew Bogyo

Abstract Proteases are regulators of diverse biological pathways including protein catabolism, antigen processing and inflammation, as well as various disease conditions, such as malignant metastasis, viral infection and parasite invasion. The identification of substrates of a given protease is essential to understand its function and this information can also aid in the design of specific inhibitors and active site probes. However, the diversity of putative protein and peptide substrates makes connecting a protease to its downstream substrates technically difficult and time-consuming. To address this challenge in protease research, a range of methods have been developed to identify natural protein substrates as well as map the overall substrate specificity patterns of proteases. In this review, we highlight recent examples of both synthetic and biological methods that are being used to define the substrate specificity of protease so that new protease-specific tools and therapeutic agents can be developed.


1981 ◽  
Author(s):  
D P Kosow ◽  
M P Esnouf ◽  
A I Gainey ◽  
H A O Hill ◽  
P J Thornally

The chemical mechanism by which vitamin K promotes the posttranslational carboxylation of specific glutamic acid residues in the N-terminal region of prothrombin has not yet been elucidated. We have previously suggested that vitamin K reacts with dioxygen and carbon dioxide to form a species of active carbon. In this study we have investigated the reaction of reduced vitamin K in alcoholic solution with dioxygen in the presence and absence of carbon dioxide. We find that carbon dioxide is necessary for the rapid formation of vitamin K oxide. Vitamin K oxide was formed when either cis or trans vitamin K was used. However, trans vitamin K is specifically required in enzymatic carboxylation studies. We propose that in rat liver microsomal preparations the carboxylation of synthetic peptide substrates is coupled to the chemical epoxidation of vitamin K by the carboxylase.


1997 ◽  
Vol 272 (47) ◽  
pp. 29590-29595 ◽  
Author(s):  
Luc Bourgeois ◽  
Michèle Brillard-Bourdet ◽  
David Deperthes ◽  
Maria A. Juliano ◽  
Luiz Juliano ◽  
...  

2008 ◽  
Vol 416 (1) ◽  
pp. 109-116 ◽  
Author(s):  
Yoshikuni Goto ◽  
Hiroe Tanji ◽  
Akira Hattori ◽  
Masafumi Tsujimoto

ERAP-1 (endoplasmic-reticulum aminopeptidase-1) is a multifunctional enzyme with roles in the regulation of blood pressure, angiogenesis and the presentation of antigens to MHC class I molecules. Whereas the enzyme shows restricted specificity toward synthetic substrates, its substrate specificity toward natural peptides is rather broad. Because of the pathophysiological significance of ERAP-1, it is important to elucidate the molecular basis of its enzymatic action. In the present study we used site-directed mutagenesis to identify residues affecting the substrate specificity of human ERAP-1 and identified Gln181 as important for enzymatic activity and substrate specificity. Replacement of Gln181 by aspartic acid resulted in a significant change in substrate specificity, with Q181D ERAP-1 showing a preference for basic amino acids. In addition, Q181D ERAP-1 cleaved natural peptides possessing a basic amino acid at the N-terminal end more efficiently than did the wild-type enzyme, whereas its cleavage of peptides with a non-basic amino acid was significantly reduced. Another mutant enzyme, Q181E, also revealed some preference for peptides with a basic N-terminal amino acid, although it had little hydrolytic activity toward the synthetic peptides tested. Other mutant enzymes, including Q181N and Q181A ERAP-1s, revealed little enzymatic activity toward synthetic or peptide substrates. These results indicate that Gln181 is critical for the enzymatic activity and substrate specificity of ERAP-1.


2009 ◽  
Vol 29 (S 01) ◽  
pp. S116-S116
Author(s):  
M. Watzka ◽  
P. Westhofen ◽  
M. Hass ◽  
D. Lütjohann ◽  
J. Oldenburg ◽  
...  

2015 ◽  
Vol 35 (3) ◽  
Author(s):  
Chonticha Saisawang ◽  
Pornpan Sillapee ◽  
Kwanhathai Sinsirimongkol ◽  
Sukathida Ubol ◽  
Duncan R. Smith ◽  
...  

The protease role of alphavirus nsP2 is critical for virus replication as only the virus protease processes the viral non-structural polypeptide. We show chikungunya nsP2 protease possesses different substrate specificity to the canonical alphavirus nsP2 polyprotein cleavage specificity.


1987 ◽  
Author(s):  
W J Suttie ◽  
A Cheung ◽  
M G Wood

The vitamin K-dependent microsomal carboxylase converts glutamyl residues in precursor proteins to γ-carboxyglutamyl (Gla) residues in completed proteins. The enzyme activity is present in significant activities in most non-skeletal tissues but has been studied most extensively in rat and bovine liver. Early studies of the enzyme utilized bound precursors of vitamin K-dependent clotting factors as substrates for the enzyme and demonstrated that the enzyme requires the reduced form of vitamin K (vitamin KH2), O2, and CO2. Subsequent investigations have taken advantage of the observation that the enzyme will carboxylate low-molecular-weight peptide substrates with Glu-Glu sequences. Utilizing a substrate such as Phe-Leu-Glu-Glu-Leu, it has been possible to demonstrate that γ-C-H release from the Glu residue of a substrate is independent of CO2 concentration. The formation of vitamin K 2,3-epoxide can also be demonstrated in a crude microsomal system, and it can be shown that the formation of this metabolite can be stimulated by the presence of a peptide substrate of the carboxylase. These observations have led to the general hypothesis that the mechanism of action of the enzyme involves interaction of vitamin KH2 with O2 to form an oxygenated intermediate that can interact with a substrate Glu residue to abstract a γ-hydrogen and in the process he converted to vitamin K epoxide (KO). The current evidence suggests that, either directly or indirectly, removal of the γ-C-H results in the formation of a carbanion at the γ-position of the Glu residue which can interact with CO2 to form Gla. The Glu residue intermediate which is formed can be demonstrated to partition between accepting a proton in the media to reform Glu, or interacting with CO2 to form Gla. Current data do not distinguish between the direct formation of a carbanion coupled to proton removal, or the participation of a reduced intermediate. Recent studies have demonstrated that the enzyme will carry out a partial reaction, the formation of vitamin K epoxide, at a decreased rate in the absence of a Glu site substrate. Epoxide formation under these conditions has the same for O2 as the carboxylation reaction and is inhibited in the same manner as the carboxylation reaction. In the presence of saturating concentrations of a Glu site substrate and C02, the ratio of KO formed, γ-C-H released, and C02 formed is 1:1:1. However, KO formation can be uncoupled from and proceeds at a higher rate than γ-C-H bond cleavage and Gla formation at low Glu site substrate concentrations. At saturating concentrations of CO2, Gla formation is equivalent to γ-C-H bond cleavage, and this unity is not altered by variations in vitamin KH2 or peptide substrate concentrations. Natural compounds with vitamin K activity are 2-Me-l,4-naphthoquinones with a polyprenyl side chain at the 3-position. Studies of vitamin K analogs have demonstrated that a 2-Me group is essential for activity but that the group at the 3-position can vary significantly. Modification of the aromatic ring of the naphthoquinone nucleus by methyl group substitution can result in alterations of either the rate of the carboxylation reaction or the apparent affinity of the enzyme for the vitamin. Studies of a large number of peptide substrates have failed to reveal any unique primary amino acid sequence which is a signal for carboxylation. However, current evidence from a number of sources suggests that a basic amino acid rich "propeptide" region of the intracellular form of the vitamin K-dependent proteins is an essential recognition site for the enzyme. This region of the precursor is lost in subsequent processing, and the manner in which it directs this posttranslational event is not yet clarified. Supported by NIH grant AM-14881.


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