Detailed Electronic Structure, Physico-Chemical Properties, Excited State Properties, Virtual Bioactivity Screening and SERS Analysis of Three Guanine Based Antiviral Drugs Valacyclovir HCl Hydrate, Acyclovir and Ganciclovir

Author(s):  
Jamelah S. Al-Otaibi ◽  
Y. Sheena Mary ◽  
Renjith Thomas ◽  
Savaş Kaya
2021 ◽  
Vol 22 (19) ◽  
pp. 10357
Author(s):  
Michał Pocheć ◽  
Karol Kułacz ◽  
Jarosław J. Panek ◽  
Aneta Jezierska

Substitution is well-known to modulate the physico-chemical properties of molecules. In this study, a combined, multifactor approach was employed to determine a plethora of substitution patterns using –Br and –O-H in 1,4-naphthoquinone and its derivatives. On the basis of classical Density Functional Theory (DFT), 25 models divided into three groups were developed. The first group contains 1,4-naphthoquinone and its derivatives substituted only by –Br. The second group consists of compounds substituted by –Br and one –O-H group. As a result of the substitution, an intramolecular hydrogen bond was formed. The third group also contains –Br as a substituent, but two –O-H groups were introduced and two intramolecular hydrogen bonds were established. The simulations were performed at the ωB97XD/6-311++G(2d,2p) level of theory. The presence of substituents influenced the electronic structure of the parent compound and its derivatives by inductive effects, but it also affected the geometry of the 2 and 3 groups, due to the intramolecular hydrogen bonding and the formation of a quasi-ring/rings. The static DFT models were applied to investigate the aromaticity changes in the fused rings based on the Harmonic Oscillator Model of Aromaticity (HOMA). The OH stretching was detected for the compounds from groups 2 and 3 and further used to find correlations with energetic parameters. The evolution of the electronic structure was analyzed using Hirshfeld atomic charges and the Substituent Active Region (cSAR) parameter. The proton reaction path was investigated to provide information on the modulation of hydrogen bridge properties by diverse substitution positions on the donor and acceptor sides. Subsequently, Car–Parrinello Molecular Dynamics (CPMD) was carried out in the double-bridged systems (group 3) to assess the cooperative effects in double –O-H-substituted systems. It was determined that the –O-H influence on the core of the molecule is more significant than that of –Br, but the latter has a major impact on the bridge dynamics. The competitive or synergic effect of two –Br substituents was found to depend on the coupling between the intramolecular hydrogen bridges. Thus, the novel mechanism of a secondary (cooperative) substituent effect was established in the double-bridged systems via DFT and CPMD results comparison, consisting of a mediation of the bromine substitutions’ influence by the cooperative proton transfer events in the hydrogen bridges.


Author(s):  
Борис Магометович Хуболов

Приведён краткий обзор проблемы электрохромизма в неупорядоченных тонких пленках сложных оксидов вольфрама на основе экспериментальных результатов, опубликованных ранее. Рассмотрены проблемы ионно-электронного упорядочения в сложных оксидах вольфрама MWO ( M = Na, K и x = 0,3), их взаимосвязь с динамикой процесса электрохромного окрашивания в этих конденсированных системах. Рассмотрены возможные пути решения обозначенных проблем. Отправной точкой нашего похода к исследованию электрохромизма и разработки физических основ технологии электрохромных устройств явился отказ от общепринятого электрохимического рассмотрения этого явления. Мы убеждены в том, что электрохромный эффект является чисто твердотельным эффектом, происходящим в конденсированной системе с сильной электронной корреляцией. Электронная структура твердого тела, имеющаяся на границе раздела твердое тело-электролит в значительной степени, управляет характером и скоростью реакций, которые протекают на его поверхности. В случае окислов роль, которую играет электронная структура особенно сложна. Все изложенное указывает на необходимость рассмотрения влияния глубоких уровней в объеме оксидной вольфрамовой бронзы и на ее поверхности, граничащей с электролитом на процесс электрохромного окрашивания. A brief review of the problem of electrochromism in disordered thin films of complex tungsten oxides is given on the basis of experimental results published earlier. The problems of the ion-electron ordering in complex tungsten oxides MWO (M = Na or K and x = 0,3) are regarded as well as their relationship with the dynamics of the process of electrochromic coloring in these condensed systems. Possible ways of solving the indicated problems are considered. The starting point of our campaign to study the electrochromism and to develop the physical grounds of the technology of electrochromic devices was the rejection of the generally accepted electrochemical consideration of this phenomenon. We are convinced that the electrochromic effect is a purely solid-state one occurring in a condensed system with a strong electron correlation. The electronic structure of a solid at the solid-electrolyte interface largely controls the nature and rate of reactions that take place on its surface. In the case of oxides, the role played by the electronic structure is particularly complex. All of the above indicates the need to consider the effect of deep levels in the bulk of the oxide tungsten bronze and on its surface, bordering the electrolyte, on the process of electrochromic coloring.


ChemInform ◽  
2010 ◽  
Vol 23 (41) ◽  
pp. no-no
Author(s):  
V. N. VOSHCHULA ◽  
YU. B. VYSOTSKII ◽  
V. J. SERAYA ◽  
N. T. NOVIKOVA ◽  
R. YA. MUSHII ◽  
...  

Author(s):  
H. Gross ◽  
H. Moor

Fracturing under ultrahigh vacuum (UHV, p ≤ 10-9 Torr) produces membrane fracture faces devoid of contamination. Such clean surfaces are a prerequisite foe studies of interactions between condensing molecules is possible and surface forces are unequally distributed, the condensate will accumulate at places with high binding forces; crystallites will arise which may be useful a probes for surface sites with specific physico-chemical properties. Specific “decoration” with crystallites can be achieved nby exposing membrane fracture faces to water vopour. A device was developed which enables the production of pure water vapour and the controlled variation of its partial pressure in an UHV freeze-fracture apparatus (Fig.1a). Under vaccum (≤ 10-3 Torr), small container filled with copper-sulfate-pentahydrate is heated with a heating coil, with the temperature controlled by means of a thermocouple. The water of hydration thereby released enters a storage vessel.


1990 ◽  
Vol 63 (03) ◽  
pp. 499-504 ◽  
Author(s):  
A Electricwala ◽  
L Irons ◽  
R Wait ◽  
R J G Carr ◽  
R J Ling ◽  
...  

SummaryPhysico-chemical properties of recombinant desulphatohirudin expressed in yeast (CIBA GEIGY code No. CGP 39393) were reinvestigated. As previously reported for natural hirudin, the recombinant molecule exhibited abnormal behaviour by gel filtration with an apparent molecular weight greater than that based on the primary structure. However, molecular weight estimation by SDS gel electrophoresis, FAB-mass spectrometry and Photon Correlation Spectroscopy were in agreement with the theoretical molecular weight, with little suggestion of dimer or aggregate formation. Circular dichroism studies of the recombinant molecule show similar spectra at different pH values but are markedly different from that reported by Konno et al. (13) for a natural hirudin-variant. Our CD studies indicate the presence of about 60% beta sheet and the absence of alpha helix in the secondary structure of recombinant hirudin, in agreement with the conformation determined by NMR studies (17)


1963 ◽  
Vol 79 (2) ◽  
pp. 263-293 ◽  
Author(s):  
E.M. Savitskii ◽  
V.F. Terekhova ◽  
O.P. Naumkin

1990 ◽  
Vol 39 (442) ◽  
pp. 996-1000 ◽  
Author(s):  
Ayao TAKASAKA ◽  
Hideyuki NEMOTO ◽  
Hirohiko KONO ◽  
Yoshihiro MATSUDA

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