scholarly journals Real-time PCR and DNA sequencing for detection and identification ofTrichophyton rubrumas a cause of culture negative chronic granulomatous dermatophytosis

2009 ◽  
Vol 47 (5) ◽  
pp. 508-514 ◽  
Author(s):  
Jean-François Durant ◽  
Pierre-Alain Fonteyne ◽  
Pauline Richez ◽  
Liliane Marot ◽  
Leila Belkhir ◽  
...  
2006 ◽  
Vol 259 (1) ◽  
pp. 35-40 ◽  
Author(s):  
Denis Portnoï ◽  
Natacha Sertour ◽  
Elisabeth Ferquel ◽  
Martine Garnier ◽  
Guy Baranton ◽  
...  

2014 ◽  
Vol 98 (9) ◽  
pp. 4179-4186 ◽  
Author(s):  
Zhe Hu ◽  
Chao Zhu ◽  
Hao Chang ◽  
Wei Guo ◽  
Diqiu Liu ◽  
...  

2015 ◽  
Vol 21 (1-2) ◽  
Author(s):  
N. Czotter ◽  
E. Manduláné Farkas ◽  
R. Lózsa ◽  
I. Ember ◽  
G. Szûcsné Varga ◽  
...  

Several grapevine pathogens are disseminated by propagating material as systemic, but latent infections. Their detection and identification have a basic importance in the production and handling of propagating stocks. Thus several sensitive and reliable diagnostic protocols mostly based on molecular techniques have been developed. Of these methods quantitative real-time PCR (q-PCR) has recently got an emerging importance. Here we collected primer data for the detection and identification of grapevine pathogens which are important in the production of propagating stocks by q-PCR. Additional novel techniques that use DNA amplification, hybridization and  sequencing are also briefly reviewed.


2018 ◽  
Vol 59 (1) ◽  
pp. 582 ◽  
Author(s):  
Paulo J. M. Bispo ◽  
Samaneh Davoudi ◽  
Matthew L. Sahm ◽  
Ai Ren ◽  
John Miller ◽  
...  

2020 ◽  
Vol 59 (1) ◽  
pp. e01764-20
Author(s):  
Srinivasan Velusamy ◽  
Katherine Jordak ◽  
Madeline Kupor ◽  
Sopio Chochua ◽  
Lesley McGee ◽  
...  

ABSTRACTWe developed a sequential quadriplex real-time PCR-based method for rapid identification of 20 emm types commonly found in invasive group A Streptococcus (iGAS) strains recovered through the Centers for Disease Control and Prevention’s Active Bacterial Core surveillance. Each emm real-time PCR assay showed high specificity and accurately identified the respective target emm type, including emm subtypes in the United States. Furthermore, this method is useful for rapid typing of GAS isolates and culture-negative specimens during outbreak investigations.


2008 ◽  
Vol 15 (5) ◽  
pp. 369-371 ◽  
Author(s):  
Patrick T. Kimmitt ◽  
Andrew Kirby ◽  
Nelun Perera ◽  
Karl G. Nicholson ◽  
Paul C. Schober ◽  
...  

2010 ◽  
Vol 78 (1) ◽  
pp. 49-55 ◽  
Author(s):  
Ricardo Bexiga ◽  
Mikko T Koskinen ◽  
Jani Holopainen ◽  
Carla Carneiro ◽  
Helena Pereira ◽  
...  

Up to half of quarter milk samples submitted for mastitis diagnosis are culture-negative results or lead to identification of coagulase-negative staphylococci or Corynebacterium bovis in conventional culturing, the so-called minor pathogens. The interpretation and usefulness of these results in terms of udder and animal health management is limited, even though the amount of resources spent is relatively high. This work aimed to test two methods of analysis of milk samples with the goal of increasing detection of intramammary pathogens. In the first study, 783 milk samples were processed in duplicate: before and after freezing at −20°C for 24 h, using standard bacteriological techniques. There was a significant difference between the two methods with samples frozen for 24 h yielding significantly fewer Gram-positive catalase-positive cocci, Gram-negative bacilli, Gram-positive bacilli and significantly more samples leading to no growth, than samples before freezing. The number of samples yielding Gram-positive catalase-negative cocci was not significantly affected by freezing. In the second study, a real-time PCR-based test was performed on milk samples with an individual quarter somatic cell count above 500 000 cells/ml that were either negative (n=51 samples) or that led to the isolation of minor pathogens in culturing: Corynebacterium bovis (n=79 samples) or non-aureus staphylococci (NAS, n=32). A mastitis pathogen, beyond the result obtained with standard bacteriology, was detected on 47% of the no-growth samples, on 35% of the samples from which C. bovis had been isolated and on 25% of the samples from which NAS had been isolated. The most commonly detected major pathogen was Escherichia coli, followed by Streptococcus uberis, Arcanobacterium pyogenes/Peptoniphilus indolicus and Streptococcus dysgalactiae. These results suggest that simply freezing milk samples for 24 h does not increase the detection of intramammary bacteria in milk samples and therefore should not be recommended. However, use of the real-time PCR-based test may be useful in diagnosing intramammary infections when milk samples with high somatic cell counts are culture-negative or when culturing results in the detection of minor pathogens.


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