scholarly journals APPLICATION OF REAL TIME PCR AND DNA SEQUENCING FOR DIFFERENTIATION OF FIELD AND VACCINAL STRAINS OF MYCOPLASMA GALLISEPTICUM

2015 ◽  
Vol 61 (145) ◽  
pp. 47-56
2013 ◽  
Vol 44 (2) ◽  
pp. 505-510 ◽  
Author(s):  
Aline Padilha Fraga ◽  
Tatiana de Vargas ◽  
Nilo Ikuta ◽  
André Salvador Kazantzi Fonseca ◽  
Álvaro José Celmer ◽  
...  

2006 ◽  
Vol 38 (1) ◽  
pp. 27-35 ◽  
Author(s):  
Susanna Deutch ◽  
Lisbeth N Pedersen ◽  
Lone Pødenphant ◽  
Rikke Olesen ◽  
Michael B Schmidt ◽  
...  

2008 ◽  
Vol 129 (1-2) ◽  
pp. 179-187 ◽  
Author(s):  
Ziv Raviv ◽  
Scott A. Callison ◽  
N. Ferguson-Noel ◽  
Stanley H. Kleven

Author(s):  
Elçin Günaydın ◽  
Özlem Kardoğan ◽  
Gülşen Goncagül ◽  
Yavuz Çokal

Background: Due to the economic impacts of Mycoplasma gallisepticum (MG) infection in poultry, it is essential to have a fast, reliable and accurate diagnostic test to diagnose the infection. Aims: It was aimed to examine the presence of MG in the South Marmara Region of Turkey where extensive commercial layer flocks exist by RPA, ELISA and real-time PCR. Materials and Methods: In the study, 981 sera and 160 tracheal swab samples (20 swabs per each flock) obtained from eight layer flocks were examined for the presence of MG-antibody by RPA, ELISA, and the presence of MG by real-time PCR, respectively. Results: MG-seropositive flock rate was determined to be 100% by RPA. Twenty-three of the RPA positive sera in each flock LA, LB, LC, LD, LF, LG, and 17 RPA positive sera in flock LE (due to 17 positive RPA sera obtained) were examined for the presence of MG antibody by ELISA, and MG-seropositive flock rate was determined to be 87.5%. As a result of the examination of a total of 32 tracheal swab samples (20 swabs perflock/5 swabs=4 pooled samples, 8 flocksX4 pooled samples= 32 samples) for the presence of MG, real-time PCR positive flock rate was found to be 75%. Conclusion: To decide the flock whether it is infected or not and the initiate effective preventive measures against MG infection as soon as possible; serology should be applied simultaneously with bacteriology and/or PCR to prevent time loss due to shortcomings of serological tests used as primary screening test such as cross reactions, sensitivity and specificity problems.


2009 ◽  
Vol 47 (5) ◽  
pp. 508-514 ◽  
Author(s):  
Jean-François Durant ◽  
Pierre-Alain Fonteyne ◽  
Pauline Richez ◽  
Liliane Marot ◽  
Leila Belkhir ◽  
...  

2007 ◽  
Vol 51 (9) ◽  
pp. 3425-3430 ◽  
Author(s):  
Mark W. Pandori ◽  
Charmie Gordones ◽  
Lina Castro ◽  
Joseph Engelman ◽  
Mark Siedner ◽  
...  

ABSTRACT We describe a real-time PCR assay for the discrimination of azithromycin-resistant and -susceptible strains of Treponema pallidum. This assay is rapid and allows for as many as 30 clinical specimens to be analyzed simultaneously without the need for DNA sequencing.


mSphere ◽  
2020 ◽  
Vol 5 (3) ◽  
Author(s):  
Kevin R. Theis ◽  
Roberto Romero ◽  
Andrew D. Winters ◽  
Alan H. Jobe ◽  
Nardhy Gomez-Lopez

ABSTRACT The prevailing paradigm in obstetrics has been the sterile womb hypothesis. However, some are asserting that the placenta, intra-amniotic environment, and fetus harbor microbial communities. The objective of this study was to determine whether the fetal and placental tissues of rhesus macaques harbor bacterial communities. Fetal, placental, and uterine wall samples were obtained from cesarean deliveries without labor (∼130/166 days gestation). The presence of bacteria in the fetal intestine and placenta was investigated through culture. The bacterial burden and profiles of the placenta, umbilical cord, and fetal brain, heart, liver, and colon were determined through quantitative real-time PCR and DNA sequencing. These data were compared with those of the uterine wall as well as to negative and positive technical controls. Bacterial cultures of fetal and placental tissues yielded only a single colony of Cutibacterium acnes. This bacterium was detected at a low relative abundance (0.02%) in the 16S rRNA gene profile of the villous tree sample from which it was cultured, yet it was also identified in 12/29 background technical controls. The bacterial burden and profiles of fetal and placental tissues did not exceed or differ from those of background technical controls. By contrast, the bacterial burden and profiles of positive controls exceeded and differed from those of background controls. Among the macaque samples, distinct microbial signals were limited to the uterine wall. Therefore, using multiple modes of microbiologic inquiry, there was not consistent evidence of bacterial communities in the fetal and placental tissues of rhesus macaques. IMPORTANCE Microbial invasion of the amniotic cavity (i.e., intra-amniotic infection) has been causally linked to pregnancy complications, especially preterm birth. Therefore, if the placenta and the fetus are typically populated by low-biomass microbial communities, current understanding of the role of microbes in reproduction and pregnancy outcomes will need to be fundamentally reconsidered. Could these communities be of benefit by competitively excluding potential pathogens or priming the fetal immune system for the microbial bombardment it will experience upon delivery? If so, what properties (e.g., microbial load and community membership) of these microbial communities preclude versus promote intra-amniotic infection? Given the ramifications of the in utero colonization hypothesis, critical evaluation is required. In this study, using multiple modes of microbiologic inquiry (i.e., culture, quantitative real-time PCR [qPCR], and DNA sequencing) and controlling for potential background DNA contamination, we did not find consistent evidence for microbial communities in the placental and fetal tissues of rhesus macaques.


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