scholarly journals Genetic diversity of black mangrove (Rhizophora mucronata Lamk.) based on morphological markers in Maros, Pangkep, and Barru Provenances

2021 ◽  
Vol 886 (1) ◽  
pp. 012010
Author(s):  
M Mukrimin ◽  
M Restu ◽  
Evi Maria DB ◽  
M Musdalifah

Abstract Mangrove forests are tropical and subtropical forests that grow typically along the coast or river estuaries. Black mangroves are a type of mangrove found in South Sulawesi, precisely in Maros, Pangkep, and Barru Districts. The decline in black mangrove populations overcomes the threat limit to germplasm which can lead to reduced genetic diversity in black mangrove plants. To reduce the incidence of extinction in black mangroves, information on genetic diversity using one of the markers is required, namely morphological markers in taking samples of tree parts taken, namely the leaves, stems, and roots which are then for monitoring carried out in the Biotechnology Laboratory and tree breeding. The method used in this study is based on the literature on the development of the Tropical Fruit Descriptor information system. The results of the three studies proved that there is a difference between the evidence and the interprovenencies. The very close morphological kinship between them proved to be found in Pangkep. Pangkep’s provenance has a high coefficient compared to the proof of Maros and Barru, which is at the time level of 70%, while the proof of Maros has the lowest coefficient compared to the proof of Barru and Pangkep, which is at the gathering level of 64%.

Diversity ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 144
Author(s):  
Nohra Castillo Rodríguez ◽  
Xingbo Wu ◽  
María Isabel Chacón ◽  
Luz Marina Melgarejo ◽  
Matthew Wohlgemuth Blair

Orphan crops, which include many of the tropical fruit species used in the juice industry, lack genomic resources and breeding efforts. Typical of this dilemma is the lack of commercial cultivars of purple passion fruit, Passiflora edulis f. edulis, and of information on the genetic resources of its substantial semiwild gene pool. In this study, we develop single-nucleotide polymorphism (SNP) markers for the species and show that the genetic diversity of this fruit crop has been reduced because of selection for cultivated genotypes compared to the semiwild landraces in its center of diversity. A specific objective of the present study was to determine the genetic diversity of cultivars, genebank accession, and landraces through genotyping by sequencing (GBS) and to conduct molecular evaluation of a broad collection for the species P. edulis from a source country, Colombia. We included control genotypes of yellow passion fruit, P. edulis f. flavicarpa. The goal was to evaluate differences between fruit types and compare landraces and genebank accessions from in situ accessions collected from farmers. In total, 3820 SNPs were identified as informative for this diversity study. However, the majority distinguished yellow and purple passion fruit, with 966 SNPs useful in purple passion fruits alone. In the population structure analysis, purple passion fruits were very distinct from the yellow ones. The results for purple passion fruits alone showed reduced diversity for the commercial cultivars while highlighting the higher diversity found among landraces from wild or semi-wild conditions. These landraces had higher heterozygosity, polymorphism, and overall genetic diversity. The implications for genetics and breeding as well as evolution and ecology of purple passion fruits based on the extant landrace diversity are discussed with consideration of manual or pollinator-assisted hybridization of this species.


2013 ◽  
Vol 51 ◽  
pp. 19-27 ◽  
Author(s):  
Sudhakar Pandey ◽  
Waquar Akhter Ansari ◽  
Vinay Kumar Mishra ◽  
Asheesh Kumar Singh ◽  
Major Singh

Biologia ◽  
2015 ◽  
Vol 70 (3) ◽  
Author(s):  
Ehsan Sedighi ◽  
Mehdi Rahimmalek

AbstractRubus hyrcanus is considered as an important wild blackberry species scattered around the Caspian Sea. In this research, ISSR and morphological markers were used to assess genetic diversity in several populations of R. hyrcanus from various geographical regions of Caspian Sea in Iran. Twenty-five populations of R. hyrcanus from three regions (North- Western (NW), North- Eastern (NE) and Central (C)) and one population from R. discolor were applied in this research. Ten primers were used to amplify bands out of which 157 (77.13%) were polymorphic. Cluster and Principle coordinate analyses (PCoA) showed the higher similarity of NE and NW populations. Analysis of molecular variance (AMOVA) revealed that the differences among three collection regions only accounted for 28.09% of the total variation, whereas differences among populations within groups were 66.03%. Analyses among three regions showed that the minimum gene diversity over loci was observed in NW (0.16) and NE (0.17), while the highest one was found in C (0.238) region. Furthermore, narrow genetic base and relatively high genetic differentiation obtained for studied R. hyrcanus genotypes. The results of morphological analysis in most cases corresponded to those obtained through molecular analyses.


2017 ◽  
Vol 1 (1) ◽  
pp. 18-22
Author(s):  
ABUBAKAR SIDIK KATILI ◽  
MUSTAMIN IBRAHIM ◽  
ZULIANTO ZAKARIA

Katili AS, Ibrahim M, Zakaria Z. 2017. Degradation level of mangrove forest and its reduction strategy in Tabongo Village, Boalemo District, Gorontalo Province, Indonesia. Asian J For 1: 18-22. This research aimed to assess the degradation level of mangrove forest and to develop strategy to reduce the degradation level. The overall research duration was 1 year, focusing on identification of mangrove forests degradation level, exploration of mangrove vegetation structure and preparation for mangrove degradation reduction strategy. The research was located in Tabongo Village, Dulupi Sub-district, Boalemo District, Gorontalo Province. The method used in the research was explorative survey, while the data analysis was done with quantitative descriptive analysis. The collecting method used was point quarter centered meter (PQCM) method. The degradation level of mangrove forest was analyzed by standard criteria of mangrove destruction according to Ministerial Decree of State Minister for The Environment (Kepmen. LH) No. 201 in 2004. Results showed that there are 4 species of mangrove plants in Tabongo Village, Dulupi Sub-district namely Rhizophora apiculata Blume, Rhizophora mucronata Lamk., Ceriops tagal (Perr) C.B.Rob, and Bruguiera which included in the Rhizophoraceae family. Rhizophora apiculata had the highest IVI value at the stage of tree and sapling, while Rhizophora mucronata Lamk had the highest IVI value at the stage of seedling. Tabongo mangrove area was a Scrub or dwarf forest type generally. This type was classified as a typical mangrove found in low edges. The mangrove condition in the coastal area of Tabongo Village, Boalemo, was categorized as broken (TNS1 = 210). While based on Assessment of criticality level of mangrove land based on the way teristris, formula was categorized as not broken (TNS2= 330). The reduction strategy that could be implemented to recover the quality of mangrove areas include (i) the assessment of the importance of the mangrove areas with regard to their ecological and economic value, (ii) quality improvement of mangrove habitat, (iii) educational approach by making the mangrove areas as learning media and source, and (iv) empowerment of people living around the mangrove areas.


Author(s):  
Miftahul Huda ◽  
Syamsuardi . ◽  
Nurainas . ◽  
P. Murni ◽  
R. Maulidah

Langsat is a specific potential of tropical fruit, especially in the Southeast Asia region. The center of distribution this species in Indonesia is Sumatra region, including the Siberut Island. There are some local germplasms (landraces) of langsat from Siberut Island namely Seccet, Siamung, Telu toru gokgok, Elakmata, and Langsat padang. Analysis of genetic diversity and genetic divergence is very important for sustainable utilizing of this tropical fruit. Based on analyzed of fourteen accessions of langsat using ITS and MatK markers indicated that landrace of langsat from Siberut Island had the higher diversity of haplotypes (ITS, Hd = 0.95; MatK, Hd = 0.80) compared to those of the Sumatran mainland (ITS, Hd = 0.85; MatK, Hd = 0.28). Based on the phylogenetic trees of fourteen accessions analyzed showed that the accessions of langsat from Siberut Island were separated from accessions of Sumatran mainland.


Sign in / Sign up

Export Citation Format

Share Document