scholarly journals Routing of Hansenula polymorpha Alcohol Oxidase: An Alternative Peroxisomal Protein-sorting Machinery

2004 ◽  
Vol 15 (3) ◽  
pp. 1347-1355 ◽  
Author(s):  
Katja Gunkel ◽  
Ralf van Dijk ◽  
Marten Veenhuis ◽  
Ida J. van der Klei
Keyword(s):  
Amino Acids ◽  
Protein Translocation ◽  
Hansenula Polymorpha ◽  
Alcohol Oxidase ◽  
N Terminus ◽  
Dependent Protein ◽  
Peptides Synthesis ◽  
Translocation Pathway ◽  
Tpr Domain ◽  
Fad Binding

Import of Hansenula polymorpha alcohol oxidase (AO) into peroxisomes is dependent on the PTS1 receptor, HpPex5p. The PTS1 of AO (-LARF) is sufficient to direct reporter proteins to peroxisomes. To study AO sorting in more detail, strains producing mutant AO proteins were constructed. AO containing a mutation in the FAD binding fold was mislocalized to the cytosol. This indicates that the PTS1 of AO is not sufficient for import of AO. AO protein in which the PTS1 was destroyed (-LARA) was normally sorted to peroxisomes. Moreover, C-terminal deletions of up to 16 amino acids did not significantly affect AO import, indicating that the PTS1 was not necessary for targeting. Consistent with these observations we found that AO import occurred independent from the C-terminal TPR-domain of HpPex5p, known to bind PTS1 peptides. Synthesis of the N-terminal domain (amino acids 1-272) of HpPex5p in pex5 cells restored AO import, whereas other PTS1 proteins were mislocalized to the cytosol. These data indicate that AO is imported via a novel HpPex5p-dependent protein translocation pathway, which does not require the PTS1 of AO and the C-terminal TPR domains of HpPex5p, but involves FAD binding and the N-terminus of HpPex5p.

scholarly journals Pyruvate Carboxylase Is an Essential Protein in the Assembly of Yeast Peroxisomal Oligomeric Alcohol Oxidase

2003 ◽  
Vol 14 (2) ◽  
pp. 786-797 ◽  
Author(s):  
Paulina Ozimek ◽  
Ralf van Dijk ◽  
Kantcho Latchev ◽  
Carlos Gancedo ◽  
Dong Yuan Wang ◽  
...  
Keyword(s):  
Pyruvate Carboxylase ◽  
Tricarboxylic Acid Cycle ◽  
Hansenula Polymorpha ◽  
Alcohol Oxidase ◽  
Methylotrophic Yeast ◽  
Tricarboxylic Acid ◽  
Matrix Proteins ◽  
Growth Media ◽  
Fad Binding

Hansenula polymorpha ass3 mutants are characterized by the accumulation of inactive alcohol oxidase (AO) monomers in the cytosol, whereas other peroxisomal matrix proteins are normally activated and sorted to peroxisomes. These mutants also have a glutamate or aspartate requirement on minimal media. Cloning of the corresponding gene resulted in the isolation of the H. polymorpha PYC gene that encodes pyruvate carboxylase (HpPyc1p). HpPyc1p is a cytosolic, anapleurotic enzyme that replenishes the tricarboxylic acid cycle with oxaloacetate. The absence of this enzyme can be compensated by addition of aspartate or glutamate to the growth media. We show that HpPyc1p protein but not the enzyme activity is essential for import and assembly of AO. Similar results were obtained in the related yeast Pichia pastoris. In vitro studies revealed that HpPyc1p has affinity for FAD and is capable to physically interact with AO protein. These data suggest that in methylotrophic yeast pyruvate carboxylase plays a dual role in that, besides its well-characterized metabolic function as anapleurotic enzyme, the protein fulfils a specific role in the AO sorting and assembly process, possibly by mediating FAD-binding to AO monomers.

Charged Amino Acids in a Preprotein Inhibit SecA-Dependent Protein Translocation

2009 ◽  
Vol 386 (4) ◽  
pp. 1000-1010 ◽  
Author(s):  
Nico Nouwen ◽  
Greetje Berrelkamp ◽  
Arnold J.M. Driessen
Keyword(s):  
Amino Acids ◽  
Protein Translocation ◽  
Charged Amino Acids ◽  
Dependent Protein

scholarly journals The sulfhydryl oxidase Erv1 is a substrate of the Mia40-dependent protein translocation pathway

FEBS Letters ◽  
2007 ◽  
Vol 581 (6) ◽  
pp. 1098-1102 ◽  
Author(s):  
Nadia Terziyska ◽  
Barbara Grumbt ◽  
Melanie Bien ◽  
Walter Neupert ◽  
Johannes M. Herrmann ◽  
...  
Keyword(s):  
Protein Translocation ◽  
Sulfhydryl Oxidase ◽  
Dependent Protein ◽  
Translocation Pathway

scholarly journals Truncation Analysis of TatA and TatB Defines the Minimal Functional Units Required for Protein Translocation

2002 ◽  
Vol 184 (21) ◽  
pp. 5871-5879 ◽  
Author(s):  
Philip A. Lee ◽  
Grant Buchanan ◽  
Nicola R. Stanley ◽  
Ben C. Berks ◽  
Tracy Palmer
Keyword(s):  
Escherichia Coli ◽  
Amino Acids ◽  
Protein Translocation ◽  
Chimeric Protein ◽  
Transport Activity ◽  
Wild Type ◽  
C Terminus ◽  
Essential Components ◽  
Translocation Pathway ◽  
Terminal Domains

ABSTRACT The TatA and TatB proteins are essential components of the twin arginine protein translocation pathway in Escherichia coli. C-terminal truncation analysis of the TatA protein revealed that a plasmid-expressed TatA protein shortened by 40 amino acids is still fully competent to support protein translocation. Similar truncation analysis of TatB indicated that the final 30 residues of TatB are dispensable for function. Further deletion experiments with TatB indicated that removal of even 70 residues from its C terminus still allowed significant transport. These results imply that the transmembrane and amphipathic helical regions of TatA and TatB are critical for their function but that the C-terminal domains are not essential for Tat transport activity. A chimeric protein comprising the N-terminal region of TatA fused to the amphipathic and C-terminal domains of TatB supports a low level of Tat activity in a strain in which the wild-type copy of either tatA or tatB (but not both) is deleted.

Mutations in the FAD-binding fold of alcohol oxidase from Hansenula polymorpha

1991 ◽  
Vol 4 (7) ◽  
pp. 821-829 ◽  
Author(s):  
Meltsje de Hoop ◽  
Sigridur Asgeirsdottir ◽  
Mieke Blaauw ◽  
Marten Veenhuis ◽  
Jim Cregg ◽  
...  
Keyword(s):  
Hansenula Polymorpha ◽  
Alcohol Oxidase ◽  
Fad Binding

scholarly journals The archaeal Sec–dependent protein translocation pathway

2004 ◽  
Vol 359 (1446) ◽  
pp. 919-927 ◽  
Author(s):  
Albert Bolhuis
Keyword(s):  
Protein Import ◽  
Protein Targeting ◽  
Protein Translocation ◽  
Model Systems ◽  
Post Translational Modification ◽  
Sequencing Data ◽  
Archaeal Protein ◽  
Domains Of Life ◽  
Dependent Protein ◽  
Translocation Pathway

Over the past three decades, transport of proteins across cellular membranes has been studied extensively in various model systems. One of the major transport routes, the so–called Sec pathway, is conserved in all domains of life. Very little is known about this pathway in the third domain of life, archaea. The core components of the archaeal, bacterial and eucaryal Sec machinery are similar, although the archaeal components appear more closely related to their eucaryal counterparts. Interestingly, the accessory factors of the translocation machinery are similar to bacterial components, which indicates a unique hybrid nature of the archaeal translocase complex. The mechanism of protein translocation in archaea is completely unknown. Based on genomic sequencing data, the most likely system for archaeal protein translocation is similar to the eucaryal co–translational translocation pathway for protein import into the endoplasmic reticulum, in which a protein is pushed across the translocation channel by the ribosome. However, other models can also be envisaged, such as a bacterial–like system in which a protein is translocated post–translationally with the aid of a motor protein analogous to the bacterial ATPase SecA. This review discusses the different models. Furthermore, an overview is given of some of the other components that may be involved in the protein translocation process, such as those required for protein targeting, folding and post–translational modification.

scholarly journals Influenza A Virus Virulence Depends on Two Amino Acids in the N-Terminal Domain of Its NS1 Protein To Facilitate Inhibition of the RNA-Dependent Protein Kinase PKR

2017 ◽  
Vol 91 (10) ◽  
Author(s):  
Kristina L. Schierhorn ◽  
Fabian Jolmes ◽  
Julia Bespalowa ◽  
Sandra Saenger ◽  
Christin Peteranderl ◽  
...  
Keyword(s):  
Amino Acids ◽  
Protein Kinase ◽  
Antiviral Activity ◽  
Influenza A Virus ◽  
Influenza A ◽  
Ns1 Protein ◽  
Dependent Protein Kinase ◽  
N Terminus ◽  
Arginine Residues ◽  
Dependent Protein

ABSTRACT The RNA-dependent protein kinase (PKR) has broad antiviral activity inducing translational shutdown of viral and cellular genes and is therefore targeted by various viral proteins to facilitate pathogen propagation. The pleiotropic NS1 protein of influenza A virus acts as silencer of PKR activation and ensures high-level viral replication and virulence. However, the exact manner of this inhibition remains controversial. To elucidate the structural requirements within the NS1 protein for PKR inhibition, we generated a set of mutant viruses, identifying highly conserved arginine residues 35 and 46 within the NS1 N terminus as being most critical not only for binding to and blocking activation of PKR but also for efficient virus propagation. Biochemical and Förster resonance energy transfer (FRET)-based interaction studies showed that mutation of R35 or R46 allowed formation of NS1 dimers but eliminated any detectable binding to PKR as well as to double-stranded RNA (dsRNA). Using in vitro and in vivo approaches to phenotypic restoration, we demonstrated the essential role of the NS1 N terminus for blocking PKR. The strong attenuation conferred by NS1 mutation R35A or R46A was substantially alleviated by stable knockdown of PKR in human cells. Intriguingly, both NS1 mutant viruses did not trigger any signs of disease in PKR+/+ mice, but replicated to high titers in lungs of PKR−/− mice and caused lethal infections. These data not only establish the NS1 N terminus as highly critical for neutralization of PKR's antiviral activity but also identify this blockade as an indispensable contribution of NS1 to the viral life cycle. IMPORTANCE Influenza A virus inhibits activation of the RNA-dependent protein kinase (PKR) by means of its nonstructural NS1 protein, but the underlying mode of inhibition is debated. Using mutational analysis, we identified arginine residues 35 and 46 within the N-terminal NS1 domain as highly critical for binding to and functional silencing of PKR. In addition, our data show that this is a main activity of amino acids 35 and 46, as the strong attenuation of corresponding mutant viruses in human cells was rescued to a large extent by lowering of PKR expression levels. Significantly, this corresponded with restoration of viral virulence for NS1 R35A and R46A mutant viruses in PKR−/− mice. Therefore, our data establish a model in which the NS1 N-terminal domain engages in a binding interaction to inhibit activation of PKR and ensure efficient viral propagation and virulence.

Post-proline endopeptidase, further characterization of the enzyme from pig kidneys

1984 ◽  
Vol 49 (8) ◽  
pp. 1846-1853 ◽  
Author(s):  
Karel Hauzer ◽  
Tomislav Barth ◽  
Linda Servítová ◽  
Karel Jošt
Keyword(s):  
Amino Acids ◽  
Aspartic Acid ◽  
Ion Exchange Chromatography ◽  
Exchange Chromatography ◽  
Relative Molecular Mass ◽  
Enzyme Molecule ◽  
Thiol Compounds ◽  
Modified Method ◽  
N Terminus

A post-proline endopeptidase (EC 3.4.21.26) was isolated from pig kidneys using a modified method described earlier. The enzyme was further purified by ion exchange chromatography on DEAE-Sephacel. The final product contained about 95% of post-proline endopeptidase. The enzyme molecule consisted of one peptide chain with a relative molecular mass of 65 600 to 70 000, containing a large proportion of acidic and alifatic amino acids (glutamic acid, aspartic acid and leucine) and the N-terminus was formed by aspartic acid or asparagine. In order to prevent losses of enzyme activity, thiol compounds has to be added.

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