scholarly journals Low Genetic Variability in the Geographically Widespread Andean Condor

The Condor ◽  
2003 ◽  
Vol 105 (1) ◽  
pp. 1-12 ◽  
Author(s):  
Sher L. Hendrickson ◽  
Robert Bleiweiss ◽  
Juan Carlos Matheus ◽  
Lilly Silva de Matheus ◽  
Norberto Luis Jácome ◽  
...  

Abstract We characterized DNA sequence variation in the mitochondrial control region and 12S ribosomal subunit for a sample of Andean Condors (Vultur gryphus) representing populations distributed throughout the species' extensive geographic range (Colombia to central Argentina and Chile). Domains II and III of the control region along with part of the 12S gene were sequenced from 38 individuals (956 base pairs in 30 individuals and 430–824 base pairs for an additional 8 individuals sampled from museum specimens), and Domain I was sequenced from five of these birds (400 base pairs). We identified a total of five haplotypes based on four variable sites distributed over Domains II and III of the control region and the 12S gene. An additional variable site was identified in Domain I. All changes were transitions and no more than three sites differed between any two individuals. Variation in the control region of condors was lower than for most other birds analyzed for these loci. Although low genetic variability is often associated with endangered megafauna, the condor example is notable because the species still maintains a substantial geographic range. Thus, low genetic variability may occur even in megafauna whose ranges have not been severely reduced over recent centuries. Our results therefore suggest that genetic data from geographically widespread megafauna provide important baseline data for assessing the relationship between genetic variability and its causes in other endangered species. Baja Variabilidad Genética en Poblaciones de Vultur gryphus con Amplia Distribución Geográfica Resumen. Caracterizamos la variación de la secuencia de ADN en la región de control mitocondrial y la subunidad ribosomal 12S en una muestra de Vultur gryphus representativa de poblaciones distribuidas a lo largo del extenso rango geográfico de la especie (Colombia, hasta el centro de Argentina y Chile). Los dominios II y III de la región de control, junto con parte del gen 12S, fueron secuenciados en 38 individuos (956 pares de base en 30 individuos y 430–824 pares de base para una muestra adicional de 8 especímenes de museo), y el dominio I fue secuenciado en 5 de estas aves (400 pares de base). Identificamos un total de cinco haplotipos basados en cuatro sitios variables en los dominios II y III de la región de control y el gen 12S. Un sitio variable adicional fue identificado en el dominio I. Todos los cambios fueron transiciones y entre dos individuos cualesquiera no variaron más de 3 sitios. La variación en la región de control de los cóndores fue más baja que para la mayoría de las aves analizadas para estos mismos loci. Aunque la baja variabilidad genética es a menudo asociada con megafauna en peligro de extinción, el ejemplo del cóndor es notable porque la especie aún mantiene un rango geográfico substancial. Así, la baja variabilidad genética se puede dar incluso en la megafauna cuya dispersión no haya sido sujeta a severas reducciones en los ultimos siglos. Por lo tanto, nuestros resultados sugieren que los datos genéticos de rapaces con amplia distribución geográfica y de otra megafauna proveen de importante información de base para evaluar la relación existente entre la variabilidad genética y sus causas en otra megafauna en peligro.

2016 ◽  
Vol 59 (2) ◽  
pp. 227-233 ◽  
Author(s):  
Anna Koseniuk ◽  
Ewa Słota

Abstract. The aim of the study was to determine the genetic variability of the Polish sheep breeds Świniarka, Wrzosówka, Pomorska, and Wielkopolska based on mitochondrial control region polymorphism. A comprehensive phylogenetic analysis and information about the genetic origin of the breeds were also obtained. The genetic variability of the breeds studied has been assessed based on the number of haplotypes, haplotype diversity, nucleotide diversity, the average number of nucleotide differences, the number of mutations, and phylogenetically informative sites. Sequence divergence between identified haplogroup A (HA) and haplogroup B (HB) was also calculated. Moreover, a neighbour-joining (NJ) haplotype tree was constructed based on Kimura's two-parameter genetic distance calculation. Finally, the history of the population was investigated by mismatch distribution and Fu's F statistics. The 559 bp long mitochondrial DNA (mtDNA) control region (CR) sequences of 143 sheep were analysed. The 65 haplotypes were defined by 45 parsimony informative sites. Among the four Polish breeds, Wrzosówka had the highest while Świniarka the lowest values of haplotype (Hd) and sequence diversity (π) (Hd =  0.9735 and π =  0.0040 for Wrzosówka; Hd =  0.8975 and π =  0.0030 for Świniarka). Five haplotypes were shared between breeds, whereas the remaining 60 were unique. The NJ phylogenetic tree has revealed that 61 haplotypes of all analysed breeds clustered into clade B while the remaining 4 haplotypes representing all but the Świniarka breed pooled together with clade A. None of the other reported mitochondrial haplogroups were identified. The haplotypes representing HB formed a star-like network with the single central haplotype, which in association with extensive haplotype sharing reveals a weak structure of Polish breeds and the existence of gene flow between the breeds studied.


2012 ◽  
Vol 84 (4) ◽  
pp. 979-999 ◽  
Author(s):  
Grazielle Gomes ◽  
Iracilda Sampaio ◽  
Horacio Schneider

The present study focus on the mitochondrial control region to investigate phylogeographic patterns and population structure in Lutjanus purpureus, and to evaluate the genetic similarity between L. purpureus and L. campechanus. For the initial analysis, 810 base pairs sequence from control region were obtained from 239 specimens of L. purpureus collected from four localities off the Brazilian coast. The results revealed the presence of a single panmictic population characterized by high values of genetic diversity. The 299 base pairs hypervariable portion were used for the combined analysis of L. purpureus and L. campechanus, being 275 haplotypes identified in the 414 specimens. Phylogenetic tree and haplotype network did not indicate phylogeographic substructuring between the two species, but rather an intense intermingling of individuals. Considering their marked morphological similarity, the molecular data presented here indicate that only one species of red snapper exists in the western Atlantic.


2002 ◽  
Vol 8 (1) ◽  
pp. 251-259 ◽  
Author(s):  
Yoshiyuki Baba ◽  
Yuzo Fujimaki ◽  
Siegfried Klaus ◽  
Olga Butorina ◽  
Serguei Drovetskii ◽  
...  

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