scholarly journals Resilience and adjustments of surface sediment bacterial communities in an enclosed shallow coastal lagoon, Magdalen Islands, Gulf of St. Lawrence, Canada

2015 ◽  
Vol 91 (5) ◽  
Author(s):  
Vani Mohit ◽  
Philippe Archambault ◽  
Connie Lovejoy
2018 ◽  
Vol 90 (12) ◽  
pp. 2022-2029 ◽  
Author(s):  
Valdis Krumins ◽  
Weimin Sun ◽  
Jia Guo ◽  
Staci Capozzi ◽  
Donna E. Fennell ◽  
...  

2020 ◽  
Vol 96 (5) ◽  
Author(s):  
Tong-tong Liu ◽  
Hong Yang

ABSTRACT Bacterial communities play crucial roles in the biogeochemical cycle of the surface sediments of freshwater lakes, but previous studies on bacterial community changes in this habitat have mostly been based on the total bacterial community (DNA level), while an exploration of the active microbiota at the RNA level has been lacking. Herein, we analysed the bacterial communities in the surface sediments of Lake Taihu at the DNA and RNA levels. Using MiSeq sequencing and real-time quantification, we found that the sequencing and quantitative results obtained at the RNA level compared with the DNA level were more accurate in responding to the spatiotemporal dynamic changes of the bacterial community. Although both sequencing methods indicated that Proteobacteria, Chloroflexi, Acidobacteria, Nitrospirae, Bacteroidetes and Actinobacteria were the dominant phyla, the co-occurrence network at the RNA level could better reflect the close relationship between microorganisms in the surface sediment. Additionally, further analysis showed that Prochlorococcus and Microcystis were the most relevant and dominant genera of Cyanobacteria in the total and active bacterial communities, respectively; our results also demonstrated that the analysis of Cyanobacteria-related groups at the RNA level was more ‘informative’.


PLoS ONE ◽  
2019 ◽  
Vol 14 (4) ◽  
pp. e0215767 ◽  
Author(s):  
François Thomas ◽  
James T. Morris ◽  
Cathleen Wigand ◽  
Stefan M. Sievert

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Hanna Sinkko ◽  
Iina Hepolehto ◽  
Christina Lyra ◽  
Johanna M. Rinta-Kanto ◽  
Anna Villnäs ◽  
...  

Abstract Coastal hypoxia is a major environmental problem worldwide. Hypoxia-induced changes in sediment bacterial communities harm marine ecosystems and alter biogeochemical cycles. Nevertheless, the resistance of sediment bacterial communities to hypoxic stress is unknown. We investigated changes in bacterial communities during hypoxic-anoxic disturbance by artificially inducing oxygen deficiency to the seafloor for 0, 3, 7, and 48 days, with subsequent molecular biological analyses. We further investigated relationships between bacterial communities, benthic macrofauna and nutrient effluxes across the sediment-water-interface during hypoxic-anoxic stress, considering differentially abundant operational taxonomic units (OTUs). The composition of the moderately abundant OTUs changed significantly after seven days of oxygen deficiency, while the abundant and rare OTUs first changed after 48 days. High bacterial diversity maintained the resistance of the communities during oxygen deficiency until it dropped after 48 days, likely due to anoxia-induced loss of macrofaunal diversity and bioturbation. Nutrient fluxes, especially ammonium, correlated positively with the moderate and rare OTUs, including potential sulfate reducers. Correlations may reflect bacteria-mediated nutrient effluxes that accelerate eutrophication. The study suggests that even slightly higher bottom-water oxygen concentrations, which could sustain macrofaunal bioturbation, enable bacterial communities to resist large compositional changes and decrease the harmful consequences of hypoxia in marine ecosystems.


Plant Biology ◽  
2016 ◽  
Vol 18 (5) ◽  
pp. 824-834 ◽  
Author(s):  
D. F. R. Cleary ◽  
A. R. M. Polónia ◽  
A. I. Sousa ◽  
A. I. Lillebø ◽  
H. Queiroga ◽  
...  

2018 ◽  
Vol 25 (32) ◽  
pp. 32756-32766 ◽  
Author(s):  
António Louvado ◽  
Francisco J. R. C. Coelho ◽  
Hélder Gomes ◽  
Daniel F. R. Cleary ◽  
Ângela Cunha ◽  
...  

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