Temporal variation of coastal surface sediment bacterial communities along an environmental pollution gradient

2010 ◽  
Vol 70 (1) ◽  
pp. 56-64 ◽  
Author(s):  
V. Thiyagarajan ◽  
M.M.Y. Tsoi ◽  
W. Zhang ◽  
P.Y. Qian
2018 ◽  
Vol 90 (12) ◽  
pp. 2022-2029 ◽  
Author(s):  
Valdis Krumins ◽  
Weimin Sun ◽  
Jia Guo ◽  
Staci Capozzi ◽  
Donna E. Fennell ◽  
...  

2020 ◽  
Vol 96 (5) ◽  
Author(s):  
Tong-tong Liu ◽  
Hong Yang

ABSTRACT Bacterial communities play crucial roles in the biogeochemical cycle of the surface sediments of freshwater lakes, but previous studies on bacterial community changes in this habitat have mostly been based on the total bacterial community (DNA level), while an exploration of the active microbiota at the RNA level has been lacking. Herein, we analysed the bacterial communities in the surface sediments of Lake Taihu at the DNA and RNA levels. Using MiSeq sequencing and real-time quantification, we found that the sequencing and quantitative results obtained at the RNA level compared with the DNA level were more accurate in responding to the spatiotemporal dynamic changes of the bacterial community. Although both sequencing methods indicated that Proteobacteria, Chloroflexi, Acidobacteria, Nitrospirae, Bacteroidetes and Actinobacteria were the dominant phyla, the co-occurrence network at the RNA level could better reflect the close relationship between microorganisms in the surface sediment. Additionally, further analysis showed that Prochlorococcus and Microcystis were the most relevant and dominant genera of Cyanobacteria in the total and active bacterial communities, respectively; our results also demonstrated that the analysis of Cyanobacteria-related groups at the RNA level was more ‘informative’.


PLoS ONE ◽  
2019 ◽  
Vol 14 (4) ◽  
pp. e0215767 ◽  
Author(s):  
François Thomas ◽  
James T. Morris ◽  
Cathleen Wigand ◽  
Stefan M. Sievert

2020 ◽  
Vol 96 (12) ◽  
Author(s):  
Syrie M Hermans ◽  
Hannah L Buckley ◽  
Fiona Curran-Cournane ◽  
Matthew Taylor ◽  
Gavin Lear

ABSTRACT Investigating temporal variation in soil bacterial communities advances our fundamental understanding of the causal processes driving biological variation, and how the composition of these important ecosystem members may change into the future. Despite this, temporal variation in soil bacteria remains understudied, and the effects of spatial heterogeneity in bacterial communities on the detection of temporal changes is largely unknown. Using 16S rRNA gene amplicon sequencing, we evaluated temporal patterns in soil bacterial communities from indigenous forest and human-impacted sites sampled repeatedly over a 5-year period. Temporal variation appeared to be greater when fewer spatial samples per site were analysed, as well as in human-impacted compared to indigenous sites (P < 0.01 for both). The biggest portion of variation in bacterial community richness and composition was explained by soil physicochemical variables (13–24%) rather than spatial distance or sampling time (<1%). These results highlight the importance of adequate spatiotemporal replication when sampling soil communities for environmental monitoring, and the importance of conducting temporal research across a wide variety of land uses. This will ensure we have a true understanding of how bacterial communities change over space and time; the work presented here provides important considerations for how such research should be designed.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Hanna Sinkko ◽  
Iina Hepolehto ◽  
Christina Lyra ◽  
Johanna M. Rinta-Kanto ◽  
Anna Villnäs ◽  
...  

Abstract Coastal hypoxia is a major environmental problem worldwide. Hypoxia-induced changes in sediment bacterial communities harm marine ecosystems and alter biogeochemical cycles. Nevertheless, the resistance of sediment bacterial communities to hypoxic stress is unknown. We investigated changes in bacterial communities during hypoxic-anoxic disturbance by artificially inducing oxygen deficiency to the seafloor for 0, 3, 7, and 48 days, with subsequent molecular biological analyses. We further investigated relationships between bacterial communities, benthic macrofauna and nutrient effluxes across the sediment-water-interface during hypoxic-anoxic stress, considering differentially abundant operational taxonomic units (OTUs). The composition of the moderately abundant OTUs changed significantly after seven days of oxygen deficiency, while the abundant and rare OTUs first changed after 48 days. High bacterial diversity maintained the resistance of the communities during oxygen deficiency until it dropped after 48 days, likely due to anoxia-induced loss of macrofaunal diversity and bioturbation. Nutrient fluxes, especially ammonium, correlated positively with the moderate and rare OTUs, including potential sulfate reducers. Correlations may reflect bacteria-mediated nutrient effluxes that accelerate eutrophication. The study suggests that even slightly higher bottom-water oxygen concentrations, which could sustain macrofaunal bioturbation, enable bacterial communities to resist large compositional changes and decrease the harmful consequences of hypoxia in marine ecosystems.


Sign in / Sign up

Export Citation Format

Share Document