scholarly journals DNA binding induces active site conformational change in the human TREX2 3'-exonuclease

2009 ◽  
Vol 37 (7) ◽  
pp. 2411-2417 ◽  
Author(s):  
U. de Silva ◽  
F. W. Perrino ◽  
T. Hollis
2015 ◽  
Vol 465 (2) ◽  
pp. 347-357 ◽  
Author(s):  
Christopher G. Tomlinson ◽  
Aaron L. Moye ◽  
Jessica K. Holien ◽  
Michael W. Parker ◽  
Scott B. Cohen ◽  
...  

Initial binding of the enzyme telomerase to its DNA substrate proceeds by a two-step mechanism involving enzyme conformational change. A protein loop in the reverse transcriptase domain is involved in these conformational changes.


2021 ◽  
Author(s):  
Alfonso Mondragon ◽  
Amy Osterman

Topoisomerase V is a unique topoisomerase that combines DNA repair and topoisomerase activities. The enzyme has an unusual arrangement, with a small topoisomerase domain followed by 12 tandem (HhH)2 domains, which include three AP lyase repair domains. The unusual architecture of this enzyme bears no resemblance to any other known topoisomerase. Here we present structures of topoisomerase V in complex with DNA. The structures show that the (HhH)2 domains wrap around the DNA and in this manner appear to act as a processivity factor. There is a conformational change in the protein to expose the topoisomerase active site. The DNA bends sharply to enter the active site, which melts the DNA and probably facilitates relaxation. The structures show a DNA binding mode not observed before and provide information on the way this unusual topoisomerase relaxes DNA.


2007 ◽  
Vol 282 (14) ◽  
pp. 10299-10310 ◽  
Author(s):  
Caterina Grillo ◽  
Chiara D'Ambrosio ◽  
Valerio Consalvi ◽  
Roberta Chiaraluce ◽  
Andrea Scaloni ◽  
...  

2000 ◽  
Vol 5 (6) ◽  
pp. 515-522 ◽  
Author(s):  
Jiro Usukura ◽  
Yuji Nishizawa ◽  
Atsushi Shimomura ◽  
Kazuto Kobayashi ◽  
Toshiharu Nagatsu ◽  
...  

1996 ◽  
Vol 24 (22) ◽  
pp. 4487-4494 ◽  
Author(s):  
M. John ◽  
R. Leppik ◽  
S. J. Busch ◽  
M. Granger-Schnarr ◽  
M. Schnarr

1975 ◽  
Vol 228 (4) ◽  
pp. 1178-1182 ◽  
Author(s):  
AK Bhan ◽  
J Scheuer

Cardiac myosin from rats exercised 90 or 150 min daily for 8 wk was compared with the myosin from the hearts of matched sedentary controls. The Ca++-ATPase activity was increased 17 percent in rats exercised 90 min and 30 percent in rats exercised 150 min daily. In the exercised group 0.18 M KCl increased the myosin ATPase activity by 50 percent but had no effect in the control group. Ethylene glycol activated the Ca++-ATPase in control myosin preparations, but had no significant effect on myosin from conditioned hearts. Heavy meromyosin (HMM) from conditioned hearts had a higher Ca++-ATPase activity than from controls. Fluorescence with 8-anilinonaphthalene sulfonate (ANS) was increased 30 percent in HMM from conditioned hearts. The results suggest that the increased myosin ATPase activity in the hearts of exercised animals may be due to a local conformational change at or near the active site.


2012 ◽  
Vol 448 (2) ◽  
pp. 171-187 ◽  
Author(s):  
Alok Pandey ◽  
Ramesh Golla ◽  
Heeyong Yoon ◽  
Andrew Dancis ◽  
Debkumar Pain

Cysteine desulfurases abstract sulfur from the substrate cysteine, generate a covalent persulfide on the active site cysteine of the enzyme, and then donate the persulfide sulfur to various recipients such as Fe–S clusters. In Saccharomyces cerevisiae, the Nfs1p protein is the only known cysteine desulfurase, and it forms a complex with Isd11p (Nfs1p·Isd11p). Both of these proteins are found primarily in mitochondria and both are essential for cell viability. In the present study we show, using the results of experiments with isolated mitochondria and purified proteins, that Isd11p is required for the cysteine desulfurase activity of Nfs1p. Whereas Nfs1p by itself was inactive, the Nfs1p·Isd11p complex formed persulfide and was active as a cysteine desulfurase. In the absence of Isd11p, Nfs1p was able to bind the substrate cysteine but failed to form a persulfide. Addition of Isd11p allowed Nfs1p with bound substrate to generate a covalent persulfide. We suggest that Isd11p induces an activating conformational change in Nfs1p to bring the bound substrate and the active site cysteine in proximity for persulfide formation. Thus mitochondrial Nfs1p is different from bacterial cysteine desulfurases that are active in the absence of accessory proteins. Isd11p may serve to regulate cysteine desulfurase activity in mitochondria.


1993 ◽  
Vol 291 (1) ◽  
pp. 103-107 ◽  
Author(s):  
H M Zhou ◽  
X H Zhang ◽  
Y Yin ◽  
C L Tsou

It has been previously reported that, during denaturation of creatine kinase by guanidinium chloride (GdmCl) or urea [Tsou (1986), Trends Biochem. Sci. 11, 427-429], inactivation occurs before noticeable conformational change can be detected, and it is suggested that the conformation at the active site is more easily perturbed and hence more flexible than the molecule as a whole. In this study, the thiol and amino groups at or near the active site of creatine kinase are labelled with o-phthalaldehyde to form a fluorescent probe. Both the emission intensity and anisotropy decrease during denaturation indicating exposure of this probe and increased mobility of the active site. The above conformational changes take place together with enzyme inactivation at lower GdmCl concentrations than required to bring about intrinsic fluorescence changes of the enzyme. At the same GdmCl concentration, the rate of exposure of the probe is comparable with that of inactivation and is several orders of magnitude faster than that for the unfolding of the molecule as a whole.


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