scholarly journals Complete Genome Sequences of Trifolium spp. Inoculant Strains Rhizobium leguminosarum sv. trifolii TA1 and CC275e: Resources for Genomic Study of the Rhizobium-Trifolium Symbiosis

2020 ◽  
pp. MPMI-08-20-0220
Author(s):  
Benjamin J. Perry ◽  
Shaun Ferguson ◽  
Aurelie Laugraud ◽  
Steve A. Wakelin ◽  
Wayne Reeve ◽  
...  
Keyword(s):  
New Zealand ◽  
Open Access ◽  
Complete Genome ◽  
Rhizobium Leguminosarum ◽  
Nitrogen Fixing ◽  
Genome Sequences ◽  
Future Studies ◽  
Genomic Study ◽  
Commercial Inoculant ◽  
Open Access Article

Rhizobium leguminosarum symbiovar trifolii strains TA1 and CC275e are nitrogen-fixing microsymbionts of Trifolium spp. and have been used as commercial inoculant strains for clovers in pastoral agriculture in Australia and New Zealand. Here we present the complete genome sequences of both strains, resolving their multipartite genome structures and allowing for future studies using genomic approaches. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

scholarly journals Complete Genome Sequence of Mesorhizobium ciceri bv. biserrulae WSM1497, an Efficient Nitrogen-Fixing Microsymbiont of the Forage Legume Biserrula pelecinus

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Rachel J. M. Brewer ◽  
Timothy L. Haskett ◽  
Joshua P. Ramsay ◽  
Graham W. O’Hara ◽  
Jason J. Terpolilli
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Forage Legume ◽  
Nitrogen Fixing ◽  
Single Chromosome ◽  
Content Type ◽  
Mesorhizobium Ciceri ◽  
Single Plasmid ◽  
Commercial Inoculant

ABSTRACT We report here the complete genome sequence of Mesorhizobium ciceri bv. biserrulae strain WSM1497, the efficient nitrogen-fixing microsymbiont and commercial inoculant in Australia of the forage legume Biserrula pelecinus. The genome consists of 7.2 Mb distributed across a single chromosome (6.67 Mb) and a single plasmid (0.53 Mb).

scholarly journals Complete Genome Sequences of Three Novel Pseudomonas fluorescens SBW25 Bacteriophages, Noxifer, Phabio, and Skulduggery

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Joanna K. Wojtus ◽  
Jess L. Fitch ◽  
Eli Christian ◽  
Tara Dalefield ◽  
Jacob K. Lawes ◽  
...  
Keyword(s):  
New Zealand ◽  
Pseudomonas Fluorescens ◽  
Complete Genome ◽  
Genome Sequences ◽  
Double Stranded Dna ◽  
Pseudomonas Fluorescens Sbw25

ABSTRACT Three novel bacteriophages, two of which are jumbophages, were isolated from compost in Auckland, New Zealand. Noxifer, Phabio, and Skulduggery are double-stranded DNA (dsDNA) phages with genome sizes of 278,136 bp (Noxifer), 309,157 bp (Phabio), and 62,978 bp (Skulduggery).

scholarly journals Physical Environmental Quality and Urban Design Education in Palestine and Turkey

2016 ◽  
Vol 1 (4) ◽  
pp. 214
Author(s):  
Ebru Cubukcu ◽  
Fahmi Salameh
Keyword(s):  
Open Access ◽  
Urban Design ◽  
Environmental Quality ◽  
Design Education ◽  
Publishing House ◽  
High Quality ◽  
Future Studies ◽  
International Publishing ◽  
Design Theories ◽  
Open Access Article

Urban designers fail to design high quality environments either because of economical constraints or educational limitation. This study aims to compare physical environmental quality and education system in two countries, Palestine and Turkey. The quantity of design education departments in each country, the course contents in each department, the quantity and profession of instructors in each department, presence of a course related to environment and behaviour studies or design theories were compared. What needs to be improved in design education to create better environments is discussed as well as the directions for future studies.© 2016. The Authors. Published for AMER ABRA by e-International Publishing House, Ltd., UK. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).Peer–review under responsibility of AMER (Association of Malaysian Environment-Behaviour Researchers), ABRA (Association of Behavioural Researchers on Asians) and cE-Bs (Centre for Environment-Behaviour Studies), Faculty of Architecture, Planning & Surveying, Universiti Teknologi MARA, Malaysia.Keywords: Urban design, environmental aesthetics, environmental quality

scholarly journals Complete Genome Sequences of Three Clostridiales R-7 Group Strains Isolated from the Bovine Rumen in New Zealand

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Sam C. Mahoney-Kurpe ◽  
Nikola Palevich ◽  
Samantha J. Noel ◽  
Sandeep Kumar ◽  
Dragana Gagic ◽  
...  
Keyword(s):  
New Zealand ◽  
Dairy Cows ◽  
Complete Genome ◽  
Genome Sequences ◽  
Bovine Rumen ◽  
Rumen Microbiome

Members of the Clostridiales R-7 group are abundant bacterial residents of the rumen microbiome; however, they are poorly characterized. We report the complete genome sequences of three members of the R-7 group, FE2010, FE2011, and XBB3002, isolated from the ruminal contents of pasture-grazed dairy cows in New Zealand.

scholarly journals Complete Genome Sequences of Nine Mycobacteriophages from New Zealand, Beatrix, Carthage, Daegal, Dulcie, Fancypants, Fenn, Inca, Naira, and Robyn

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
C. G. Davies ◽  
J. K. Wojtus ◽  
C. E. R. Gilligan ◽  
S. F. Latu ◽  
T. J. Manning ◽  
...  
Keyword(s):  
New Zealand ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type

Beatrix, Carthage, Daegal, Dulcie, Fancypants, Fenn, Inca, Naira, and Robyn are newly isolated bacteriophages capable of infecting Mycolicibacterium smegmatis mc2 155. We discovered, sequenced, and annotated these New Zealand bacteriophages.

scholarly journals Complete Genome Sequence of Mesorhizobium sophorae ICMP 19535T, a Highly Specific, Nitrogen-Fixing Symbiont of New Zealand Endemic Sophora spp

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Sofie E. De Meyer ◽  
Dung Tuan Nguyen ◽  
Penghao Wang ◽  
Mitchell Andrews
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Root Nodules ◽  
Nitrogen Fixing ◽  
Content Type

ABSTRACT We report here the complete genome sequence of Mesorhizobium sophorae ICMP 19535T. This strain was isolated from Sophora microphylla root nodules and can nodulate and fix nitrogen with this host and also with Sophora prostrata, Sophora longicarinata, and Clianthus puniceus. The genome consists of 8.05 Mb.

Herbivory by an invasive snail increases nitrogen fixation in a nitrogen-limited stream

2009 ◽  
Vol 66 (8) ◽  
pp. 1309-1317 ◽  
Author(s):  
Clay Porter Arango ◽  
Leslie Anne Riley ◽  
Jennifer Leah Tank ◽  
Robert Ogden Hall,
Keyword(s):  
Nitrogen Fixation ◽  
New Zealand ◽  
Nitrogen Cycling ◽  
Algal Biomass ◽  
Nitrogen Fixing ◽  
Nitrogen Flux ◽  
Future Studies ◽  
Nitrogen Fixers ◽  
Heavy Grazing ◽  
Anthropogenic Nitrogen

Despite anthropogenic nitrogen contributions, nitrogen fixation contributes half of biosphere inputs but has rarely been quantified in streams. Herbivory controls algal biomass and productivity in streams, and we hypothesized that herbivory could also control nitrogen fixation. We released periphyton from herbivory in nitrogen-limited Polecat Creek, Wyoming, where heavy grazing by the invasive New Zealand mudsnail ( Potamopyrgus antipodarum ) dominates nitrogen cycling. One and two weeks after releasing periphyton, we found higher rates of nitrogen fixation on heavily grazed rocks (two-way analysis of variance (ANOVA), p = 0.012). Time elapsed after snail manipulation had no effect (two-way ANOVA, p = 0.24). Grazing changed periphyton composition by reducing the proportion of green algae and increasing the proportion of nitrogen-fixing diatoms (multivariate ANOVA, p = 0.001). Nitrogen fixation rates increased disproportionately to nitrogen-fixing algal cells, indicating that snails increased nitrogenase efficiency, probably by improving light and (or) nutrient availability to nitrogen fixers. We incorporated our nitrogen fixation rates into a published nitrogen budget for Polecat Creek and found that nitrogen flux into the periphyton was 50% higher when we included nitrogen fixation. Herbivory can increase nitrogen fixation in streams, and future studies should measure nitrogen fixation for a more thorough understanding of stream nitrogen cycling.

scholarly journals Complete Genome Sequences of Three Laboratory Strains of Dengue Virus (Serotypes 2, 3, and 4) Available in South Korea

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yun Young Go ◽  
Eunhye Jung ◽  
Udeni B. R. Balasuriya
Keyword(s):  
South Korea ◽  
Dengue Virus ◽  
Genetic Information ◽  
Complete Genome ◽  
Genome Sequences ◽  
Future Studies ◽  
Virus Serotype ◽  
Pathogenic Viruses ◽  
Dengue Virus Serotypes ◽  
Dengue Virus Serotype 2

Here, we report the complete genome sequences of three laboratory strains of dengue virus serotype-2 (DENV-2/KBPV-VR-29), -3 (DENV-3/KBPV-VR-30), and -4 (DENV-4/KBPV-VR-31) obtained from the Korea Bank for Pathogenic Viruses ( http://kbpv.knrrc.or.kr ). The complete genetic information presented in this study on commonly used DENV laboratory strains provides valuable information for future studies.

scholarly journals Genome Sequence Resources for the Maize Pathogen Fusarium temperatum Isolated in Poland

2020 ◽  
pp. MPMI-09-20-0266
Author(s):  
Marcin Wit ◽  
Yueqiang Leng ◽  
Yang Du ◽  
Małgorzata Cegiełko ◽  
Emilia Jabłońska ◽  
...  
Keyword(s):  
Open Access ◽  
Genome Size ◽  
Genome Sequence ◽  
Fungal Pathogens ◽  
Fusarium Fujikuroi ◽  
Genome Sequences ◽  
Fusarium Temperatum ◽  
Open Access Article

Fusarium temperatum (Scaufl. & Munaut) is one of the most important fungal pathogens that cause ear and stalk rots in maize. In this study, we sequenced genomes of two F. temperatum isolates (KFI615 and KFI660) isolated from corn ears in Poland. A total of 110.3 and 116.3 million 100-nucleotide paired-end clean reads were obtained for KFI615 and KFI660, which were assembled into 20 and 18 scaffolds with an estimated genome size of 45.21 and 45.00 Mb, respectively. These genome sequences provide important resources for understanding pathogenicity and biology of the pathogens within the Fusarium fujikuroi complex. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

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