The effect of undulations on the electrostatic potential in a polyelectrolyte system

I consider the effect of macromolecular undulation on the electrostatic potential around a rod-like molecule. This effort is set to demonstrate the use of a particular perturbation technique through application to a geometrical system of general colloidal interest. The Poisson—Boltzmann equation together with a constant charge boundary condition on the well defined surface of an undulating cylinder is reformulated in integral equation form by use of Green’s theorem. A perturbation solution appropriate to the deformed boundary can be extracted when the Green function is approximated by that relevant to a reference, undeformed cylinder. Numerical results demonstrate that undulation causes significant deviations (increases) in electrochemical properties from expected behaviour, assuming rigid cylindrical symmetry. By considering the total free energy of the system it is found that electrostatics tend to diminish the extent of the undulations. The predicted deviations are briefly discussed in light of measured intermolecular electrostatic forces acting in a condensed phase of close-packed DNA. The perturbation technique has potential applications to mathematically similar problems occurring in hydrodynamics.

1981 ◽  
Vol 59 (13) ◽  
pp. 1860-1864 ◽  
Author(s):  
Joseph E. Ledbetter ◽  
Thomas L. Croxton ◽  
Donald A. McQuarrie

The Poisson–Boltzmann equation for two large charged spheres immersed in an ionic solution with either constant surface charge density or constant surface potential is solved numerically. The repulsion between the spheres is calculated from the electrostatic potential in the double layer surrounding the spheres. Good agreement between this numerically calculated force and the force computed using the Derjaguin formula for spheres with constant surface charge density is found at small separations of the spheres.


2019 ◽  
Vol 97 (6) ◽  
pp. 656-661
Author(s):  
Leila Djebbara ◽  
Mohammed Habchi ◽  
Abdalhak Boussaid

By using the optimal linearization method (OLM), the potential of the electrical double layer created by a highly charged cylindrical polyion immersed in an electrolyte reservoir, which is represented by the so-called Poisson–Boltzmann equation (PBE), has been solved analytically under general potential conditions. For this system, three regions must be considered. The first one is in the near-neighborhood of the polyion and it is deprived of coions because of the repulsion phenomenon between the polyion and the coions, as proposed by Fuoss et al. (Proc. Natl. Acad. Sci. 37, 579 (1951). doi: 10.1073/pnas.37.9.579 ). For the second region, where the potential is slightly lower, we propose an OLM for solving the PBE. In the last region, where the potential is sufficiently low, the approximation of Debye–Hückel is adopted. This method allowed us to overcome some shortcomings in the analytical calculation of the electrostatic potential created by a polyion in an electrolyte solution.


2021 ◽  
Vol 87 (6) ◽  
pp. 55-69
Author(s):  
Vladimir Farafonov ◽  
Alexander Lebed ◽  
Nikolay Mchedlov-Petrossyan

The key parameter related to the structure of the electric double layer of ionic surfactant micelles – electrostatic potential – is considered. A brief overview of experimental methods and theoretical models for estimating electrostatic potential- is given. The calculating method for the electrostatic potential based on a numerical solution of the Poisson-Boltzmann equation using an atomistic model of anionic surfactant micelle - is proposed. The parameters necessary for the construction of atomistic models - are obtained from molecular dynamic modeling.  The electrostatic potentials for the micelles of sodium dodecyl sulfate and cetyltrimethylammonium bromide at different ionic strengths - were calculated by this method. The results are discussed in comparison with the values calculated in the simplified model, the Ohshima – Healy – White equation.


2014 ◽  
Vol 09 (01) ◽  
pp. 105-114
Author(s):  
MOHAMMAD J. I. A. SAUDE ◽  
BASHIR I. MORSHED

Single molecule DNA sequencing requires new approaches to identify nucleotide bases. Using molecular dynamics simulations, we investigate the intrinsic electrostatics of single-stranded DNA by solving the nonlinear Poisson–Boltzmann equation. The results show variations of the molecular electrostatic potential (MEP) within 3 nm from the center of the sugar backbone, with suitably differentiable variations at 1.4 nm distance. MEP variations among four nucleotide bases are the most significant near ~ 33.7° and ~ 326.3° angular orientation, while the influences of the neighboring bases on MEPs become insignificant after the 3rd-nearest neighbors. This analysis shows potential for direct electronic sequencing of individual DNA molecules. [Formula: see text]Special Issue Comment: This paper about DNA sequencing based on molecular electrostatic potential maps of the DNA in the channel is related to the Special Issue articles about: measuring enzymes,32 and solving single molecules' trajectories with the RDF approach33 and with the QuB software.34


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