scholarly journals Quantifying relative virulence: when μ max fails and AUC alone just is not enough

Author(s):  
Ruben Michael Ceballos ◽  
Carson Len Stacy

A challenge in virology is quantifying relative virulence (V R) between two (or more) viruses that exhibit different replication dynamics in a given susceptible host. Host growth curve analysis is often used to mathematically characterize virus–host interactions and to quantify the magnitude of detriment to host due to viral infection. Quantifying V R using canonical parameters, like maximum specific growth rate (μ max), can fail to provide reliable information regarding virulence. Although area-under-the-curve (AUC) calculations are more robust, they are sensitive to limit selection. Using empirical data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that has proven to be more robust than existing methods for assessing V R. This metric (I SC) accurately aligns biological phenomena with quantified metrics to determine V R. It also addresses a gap in virology by permitting comparisons between different non-lytic virus infections or non-lytic versus lytic virus infections on a given host in single-virus/single-host infections.

2020 ◽  
Author(s):  
Ruben Michael Ceballos ◽  
Carson Len Stacy

AbstractOne of the more challenging aspects in quantitative virology is quantifying relative virulence between two (or more) viruses that have different replication dynamics in a given susceptible host. Host growth curve analysis is often used to detail virus-host interactions and to determine the impact of viral infection on a host. Quantifying relative virulence using canonical parameters such as maximum specific growth rate (μmax) can fail to provide accurate information regarding experimental infection, especially for non-lytic viruses. Although area-under-the-curve (AUC) can be more robust by through calculation of a percent inhibition (PIAUC), this metric can be sensitive to limit selection. In this study, using empirical and extrapolated data from Sulfolobus Spindle-shaped Virus (SSV) infections, we introduce a novel, simple metric that is proven to be more robust and less sensitive than traditional measures for determining relative virulence. This metric (ISC) more accurately aligns biological phenomena with quantified metrics from growth curve analysis to determine trends in relative virulence. It also addresses a major gap in virology by allowing comparisons between non-lytic single-virus/single-host (SVSH) infections and between non-lytic versus lytic virus infection on a given host. How ISC may be applied to polymicrobial infection – both coinfection of a host culture and superinfection of a single cell with more than one virus (or other pathogen type) is a topic of ongoing investigation.


2010 ◽  
Vol 49 (8) ◽  
pp. 734-752 ◽  
Author(s):  
Katherina A. Nikzad-Terhune ◽  
Keith A. Anderson ◽  
Robert Newcomer ◽  
Joseph E. Gaugler

2003 ◽  
Vol 9 (1) ◽  
pp. 10-21 ◽  
Author(s):  
Juliet M. Coscia ◽  
M. Douglas Ris ◽  
Paul A. Succop ◽  
Kim N. Dietrich

2012 ◽  
Vol 48 (2) ◽  
pp. 382-386 ◽  
Author(s):  
Juan Aguirre ◽  
Mª Rosa Rodríguez ◽  
Rodrigo González ◽  
Gonzalo García de Fernando

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