scholarly journals CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

2016 ◽  
Author(s):  
Malachi Griffith ◽  
Nicholas C Spies ◽  
Kilannin Krysiak ◽  
Adam C Coffman ◽  
Joshua F McMichael ◽  
...  

AbstractCIViC is an expert crowdsourced knowledgebase for Clinical Interpretation of Variants in Cancer (www.civicdb.org) describing the therapeutic, prognostic, and diagnostic relevance of inherited and somatic variants of all types. CIViC is committed to open source code, open access content, public application programming interfaces (APIs), and provenance of supporting evidence to allow for the transparent creation of current and accurate variant interpretations for use in cancer precision medicine.

2017 ◽  
Author(s):  
Vicky Steeves

An open source database and website that lists and maps women who have shown great leadership in open everything -- open education resources, open source, open access, etc.! This repository holds the source code and data for a list of women leaders in openness! This website contains a searchable, sortable list of women who do work in the field of openness: open access, open science, open scholarship, open source code, open data, open education resources -- anything open. There is also a map available for folks who would like to look for women leaders nearest them -- the hope is that this map makes planning conferences, workshops, and events more convenient. The data comes from April Hathcock’s Google Doc and merge requests to this repository.


2017 ◽  
Author(s):  
George H. Shaw ◽  
◽  
Howard D. Mooers ◽  
Josef Smrz ◽  
Zdenek Papez ◽  
...  

Author(s):  
Michael Nones ◽  
Alessio Pugliese ◽  
Alessio Domeneghetti ◽  
Massimo Guerrero

2018 ◽  
Author(s):  
Jianfeng Li ◽  
Bowen Cui ◽  
Yuting Dai ◽  
Ling Bai ◽  
Jinyan Huang

The number of bioinformatics resources, such as tools/scripts and databases are growing exponentially. This poses a great challenge for users to access, manage, and integrate the corresponding bioinformatics resources. To facilitate the request, we proposed a comprehensive R package, BioInstaller, which includes the R functions, Shiny application, and the HTTP representational state transfer (REST) application programming interfaces (APIs). We also established a community-based configuration pool to collect, access and share bioinformatics resources. The source code of BioInstaller is freely available at our lab website http://bioinfo.rjh.com.cn/labs/jhuang/tools/bioinstaller or popular package host GitHub at: https://github.com/JhuangLab/BioInstaller. Also, a docker image can be downloaded from DockerHub (https://hub.docker.com/r/bioinstaller).


2010 ◽  
Author(s):  
Martin Fenner

Four weeks ago I wrote about the Beyond the PDF workshop that is planned for January in San Diego. The goal of the workshop is to identify a set of requirements, and a group of willing participants to develop open source code to accelerate scientific knowledge sharing. ...


Author(s):  
Bashar Shahir Ahmed ◽  
Mohammed Al-Sarem ◽  
Mohamed Larbi Ben Maati

This chapter has discussed the technical aspects of the electronic customer relationship management intelligence (E-CRM). The paper has mainly focused on the technological development, as well as, IT implementation of the E-CRM intelligence. Different engines of E-CRM together with the recent technological trends have also been included in the discussion. Towards the end the paper has provided a simple open source code that has been used to develop CRM related applications. The code is intended to illustrate the E-CRM idea and also the results. The paper can be found useful in analyzing technical reviews on electronic customer relationship management.


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