scholarly journals Does plant diversity determine the diversity of the rhizosphere microbial community?

2021 ◽  
Author(s):  
Aleksei Zverev ◽  
Arina Kichko ◽  
Vasiliy Shapkin ◽  
Aleksandr Pinaev ◽  
Nikolay Provorov ◽  
...  
Keyword(s):  
Species Richness ◽  
Plant Communities ◽  
Mutual Influence ◽  
Plant Root ◽  
Alpha Diversity ◽  
Diversity Indices ◽  
Font Size ◽  
Community System ◽  
Highly Correlated ◽  
Rhizosphere Community

The rhizosphere community represents an “ecological interface” between plant and soil, providing the plant with a number of advantages. Close connection and mutual influence in this communication allow to talk about the self-adjusting “plant-rhizosphere community” system, which should be be studied in connection. Diversity estimation is one of the ways of describing both bacterial and plant communities. Based on the literature, there are two assumptions of how the diversity of plant communities related to the diversity of bacterial communities: 1) an increase in the species richness of plants leads to an increase in the number of available micro-niches, and increasing of microbial diversity, 2) an increase in the species richness of plants is accompanied by the predominant development of bacteria from highly productive specific taxa and decreasing in the diversity of microorganisms. E xperimental studies show controversial results. We analyzed field sites (rye crop field and two fallow sites), using DNA isolation of both the plant root mass (followed by sequencing of the ITS1 region) and rhizosphere microorganisms (followed by sequencing of the 16s rDNA V4 region). This allowed us to 1) accurately determine the abundance and taxonomic position of plant communities; 2) extract information about both plant and microbial communities from the same sample. There was no correlation between alpha-diversity indices of plants and rhizosphere communities. Alpha-diversity connection should be explored in similar plant communities, such as synusia. We hypothesize, that the significant differences in plant abundances lead to significant changes in exudation profiles, and the loss of diversity connection. T he beta-diversity between rhizosphere communities and plant communities is highly correlated, in particular in terms of the abundance of taxa. This can be explained by a potential correlation (as reported in the literature) or by the presence of statistical artifacts. p { margin-bottom: 0.1in; direction: ltr; color: #000000; line-height: 115%; text-align: left; orphans: 2; widows: 2; background: transparent }p.western { font-family: "Liberation Serif", serif; font-size: 12pt; so-language: en-US }p.cjk { font-family: "Noto Serif CJK SC"; font-size: 12pt; so-language: zh-CN }p.ctl { font-family: "Lohit Devanagari"; font-size: 12pt; so-language: hi-IN }a:link { color: #000080; text-decoration: underline

scholarly journals Does plant diversity determine the diversity of the rhizosphere microbial community?

2021 ◽  
Author(s):  
Aleksei Zverev ◽  
Arina Kichko ◽  
Vasiliy Shapkin ◽  
Aleksandr Pinaev ◽  
Nikolay Provorov ◽  
...  
Keyword(s):  
Species Richness ◽  
Plant Communities ◽  
Mutual Influence ◽  
Plant Root ◽  
Alpha Diversity ◽  
Diversity Indices ◽  
Font Size ◽  
Community System ◽  
Highly Correlated ◽  
Rhizosphere Community

The rhizosphere community represents an “ecological interface” between plant and soil, providing the plant with a number of advantages. Close connection and mutual influence in this communication allow to talk about the self-adjusting “plant-rhizosphere community” system, which should be be studied in connection. Diversity estimation is one of the ways of describing both bacterial and plant communities. Based on the literature, there are two assumptions of how the diversity of plant communities related to the diversity of bacterial communities: 1) an increase in the species richness of plants leads to an increase in the number of available micro-niches, and increasing of microbial diversity, 2) an increase in the species richness of plants is accompanied by the predominant development of bacteria from highly productive specific taxa and decreasing in the diversity of microorganisms. E xperimental studies show controversial results. We analyzed field sites (rye crop field and two fallow sites), using DNA isolation of both the plant root mass (followed by sequencing of the ITS1 region) and rhizosphere microorganisms (followed by sequencing of the 16s rDNA V4 region). This allowed us to 1) accurately determine the abundance and taxonomic position of plant communities; 2) extract information about both plant and microbial communities from the same sample. There was no correlation between alpha-diversity indices of plants and rhizosphere communities. Alpha-diversity connection should be explored in similar plant communities, such as synusia. We hypothesize, that the significant differences in plant abundances lead to significant changes in exudation profiles, and the loss of diversity connection. T he beta-diversity between rhizosphere communities and plant communities is highly correlated, in particular in terms of the abundance of taxa. This can be explained by a potential correlation (as reported in the literature) or by the presence of statistical artifacts. p { margin-bottom: 0.1in; direction: ltr; color: #000000; line-height: 115%; text-align: left; orphans: 2; widows: 2; background: transparent }p.western { font-family: "Liberation Serif", serif; font-size: 12pt; so-language: en-US }p.cjk { font-family: "Noto Serif CJK SC"; font-size: 12pt; so-language: zh-CN }p.ctl { font-family: "Lohit Devanagari"; font-size: 12pt; so-language: hi-IN }a:link { color: #000080; text-decoration: underline

scholarly journals Diversity Indices of Plant Communities and Their Rhizosphere Microbiomes: An Attempt to Find the Connection

2021 ◽  
Vol 9 (11) ◽  
pp. 2339
Author(s):  
Aleksei O. Zverev ◽  
Arina A. Kichko ◽  
Aleksandr G. Pinaev ◽  
Nikolay A. Provorov ◽  
Evgeny E. Andronov
Keyword(s):  
Microbial Communities ◽  
Plant Communities ◽  
Plant Diversity ◽  
Beta Diversity ◽  
Mutual Influence ◽  
Plant Root ◽  
Alpha Diversity ◽  
Diversity Indices ◽  
Alpha And Beta Diversity ◽  
Highly Correlated

The rhizosphere community represents an “ecological interface” between plant and soil, providing the plant with a number of advantages. Despite close connection and mutual influence in this system, the knowledge about the connection of plant and rhizosphere diversity is still controversial. One of the most valuable factors of this uncertainty is a rough estimation of plant diversity. NGS sequencing can make the estimations of the plant community more precise than classical geobotanical methods. We investigate fallow and crop sites, which are similar in terms of environmental conditions and soil legacy, yet at the same time are significantly different in terms of plant diversity. We explored amplicons of both the plant root mass (ITS1 DNA) and the microbial communities (16S rDNA); determined alpha- and beta-diversity indices and their correlation, and performed differential abundance analysis. In the analysis, there is no correlation between the alpha-diversity indices of plants and the rhizosphere microbial communities. The beta-diversity between rhizosphere microbial communities and plant communities is highly correlated (R = 0.866, p = 0.01). ITS1 sequencing is effective for the description of plant root communities. There is a connection between rhizosphere communities and the composition of plants, but on the alpha-diversity level we found no correlation. In the future, the connection of alpha-diversities should be explored using ITS1 sequencing, even in more similar plant communities—for example, in different synusia.

A comparison of Mopaneveld vegetation in South Africa, Namibia and Zimbabwe

Bothalia ◽  
2003 ◽  
Vol 33 (1) ◽  
pp. 121-134 ◽  
Author(s):  
F. Siebert ◽  
G. J. Bredenkamp ◽  
S. J. Siebert
Keyword(s):  
South Africa ◽  
Species Richness ◽  
Plant Communities ◽  
Environmental Gradients ◽  
Floristic Composition ◽  
Alpha Diversity ◽  
Environmental Data ◽  
Annual Rainfall ◽  
Vegetation Types ◽  
Rainfall Events

Data from fifteen phytosociological studies were merged and classified to describe and compare the vegetation of geo­graphically separated and climatically different Mopanev eld types in South Africa. Namibia and Zimbabw e. Seven v egetation types and ten major plant communities were identified using TW INSPAN. Vegetation types were separated according to geo­graphical regions. There were significant floristic affinities even though there w ere geological and climatic differences between the regions. Plant communities were described according to vegetation structure, habitat and floristic composition. Although environmental data were not adequate for a detailed ordination. DECORANA reflected the distribution of vegetation types and major plant communities along environmental gradients. Limitations of large phytosociological syntheses were also addressed. Species richness (alpha diversity) was calculated for each geographical region. The Musina (Messina) region north of the Soutpansberg. South Africa, has the highest species richness, and Kaokoland. Namibia, the lowest Due to irregular annual rainfall patterns in semi-arid Mopaneveld, it is suggested that variance in species richness is associated with temporal vegeta­tion states induced by rainfall events. Species richness of Mopaneveld was further compared w ith other sav anna types.

The importance and use of taxon sampling curves for comparative biodiversity research with forest arthropod assemblages

2005 ◽  
Vol 137 (1) ◽  
pp. 120-127 ◽  
Author(s):  
Christopher M. Buddle ◽  
Julien Beguin ◽  
Elise Bolduc ◽  
Alida Mercado ◽  
Tara E. Sackett ◽  
...  
Keyword(s):  
Species Richness ◽  
Alpha Diversity ◽  
Wiener Index ◽  
Diversity Indices ◽  
Taxon Sampling ◽  
Sampling Effort ◽  
Single Index ◽  
Arthropod Biodiversity ◽  
Forested Ecosystems ◽  
Number Of Individuals

AbstractFor over three decades, the importance of taxon sampling curves for comparative biodiversity studies has been repeatedly stated. However, many entomologists (both within Canada and worldwide) continue to publish studies without standardizing their data to take sampling effort into account. We present a case study to illustrate the importance of such standardization, using the collection of spiders (Araneae) by pitfall traps as model data. Data were analyzed using rarefaction to represent one example of a taxon sampling curve, and by a variety of traditional diversity indices to describe alpha diversity. Raw species richness and single-index diversity measures (Shannon–Wiener, Simpson's, and Fisher's α) provided contradictory results. Rarefied species richness standardized to the number of individuals collected enabled more accurate comparisons of diversity and revealed when sampling was insufficient. Focusing on arthropods occurring in forested ecosystems, we also examined the use of taxon sampling curves in current literature by reviewing 133 published articles from 14 journals. Only 26% of the published articles in our review used a taxon sampling curve, and raw species richness and the Shannon–Wiener index of diversity were the most commonly used estimates. There is clearly a need to modify how alpha diversity is measured and compared for arthropod biodiversity studies. We recommend the abandonment of both raw species richness and single-index measures of diversity, and reiterate the need to use rarefaction or a related technique that allows for meaningful comparisons of species richness while taking into account sampling effort.

Diversity of nematodes in the yellow-necked field mouseApodemus flavicollisfrom the Peripannonic region of Serbia

2014 ◽  
Vol 90 (1) ◽  
pp. 14-20 ◽  
Author(s):  
B. Čabrilo ◽  
V.M. Jovanović ◽  
O. Bjelić-Čabrilo ◽  
I. Budinski ◽  
J. Blagojević ◽  
...  
Keyword(s):  
Species Richness ◽  
Generalized Linear Models ◽  
Linear Models ◽  
Alpha Diversity ◽  
Nematode Species ◽  
Diversity Indices ◽  
Taxonomic Distinctness ◽  
Field Mouse ◽  
Apodemus Flavicollis ◽  
Longitudinal Gradient

AbstractUp to six nematode species were identified from 86 specimens of the yellow-necked field mouseApodemus flavicollisfrom three mountainous localities known as Avala, Cer and Liškovac in Serbia. The highest prevalence of infection of 97% was recorded from Mt. Avala. Only one nematode species,Syphacia frederici, occurred in all three localities. There was complete overlap in nematode species from Mts. Avala and Liškovac, whereas the taxonomic distinctness of Mt. Cer was seen in the presence of the insect-transmitted speciesRictularia proni. Locality was a statistically significant factor in all the best-fitted generalized linear models of variation in abundances. The highest level of both species richness and parasite alpha diversity (Shannon'sH= 1.47) was found in the easternmost Mt. Liškovac, whereas the diversity indices were lowest for the westernmost Mt. Cer (Shannon'sH= 0.48). In view of this geographical difference, the beta diversity indices were calculated along a west to east longitudinal gradient.

scholarly journals Effects of the invasive plant Xanthium strumarium on diversity of native plant species: A competitive analysis approach in North and Northeast China

PLoS ONE ◽  
2020 ◽  
Vol 15 (11) ◽  
pp. e0228476
Author(s):  
Mazher Farid Iqbal ◽  
Ming-Chao Liu ◽  
Aafia Iram ◽  
Yu-Long Feng
Keyword(s):  
Species Richness ◽  
Plant Species ◽  
Plant Communities ◽  
Northeast China ◽  
Invasive Plant ◽  
Diversity Index ◽  
Diversity Indices ◽  
Xanthium Strumarium ◽  
Native Plant ◽  
Native Plant Species

Xanthium strumarium is native to North America and now has become one of the invasive alien species (IAS) in China. In order to detect the effects of the invader on biodiversity and evaluate its suitable habitats and ecological distribution, we investigated the abundance, relative abundance, diversity indices, and the number of the invasive and native plants in paired invaded and non-invaded quadrats in four locations in North and Northeast China. We also analyzed the effects of monthly mean maximum and minimum temperatures, relative humidity (%), and precipitations (mm). Strong positive significant (P < 0.01) correlation and maximum interspecific competition (41%) were found in Huailai between invaded and non-invaded quadrats. Shannon’s Diversity Index showed that non-invaded plots had significantly (P < 0.05) more diversified species than invaded ones. The significant (P < 0.05) Margalef’s Richness Index was found in Huailai and Zhangjiakou in non-invaded recorded heterogeneous nature of plant communities. Similarly, significant (P < 0.05) species richness found in Huailai and Zhangjiakou in non-invaded quadrats compared to invaded ones. Maximum evenness of Setaria feberi (0.47, 0.37), Seteria viridis (0.43) found in Fushun and Zhangjiakou recorded more stable in a community compared to other localities. Evenness showed positive relationship of Shannon Entropy within different plant species. The higher dissimilarity in plant communities found in Huailai (87.06%) followed by Yangyuan (44.43%), Zhangjiakou (40.13%) and Fushun (29.02%). The significant (P < 0.01) value of global statistics R (0.943/94.3%) showed high species diversity recorded in Huailai followed by Zhangjiakou recorded by non-metric multidimensional scaling and analysis of similarity between invaded and non-invaded plots. At the end it was concluded that the diversity indices reduced significantly (P < 0.05) in invaded quadrats indicated that native plant species become less diverse due to X. strumarium invasion. The degrees of X. strumarium invasion affected on species richness resulted to reduce diversity indices significantly in invaded quadrats.

scholarly journals Plant communities on the islands of two Altiplanic salt lakes in the Andean region of Bolivia

Check List ◽  
2016 ◽  
Vol 12 (5) ◽  
pp. 1975 ◽  
Author(s):  
Alejandro Coca-Salazar ◽  
Huber Villca ◽  
Mauricio Torrico ◽  
Fernando D. Alfaro
Keyword(s):  
Species Richness ◽  
Community Structure ◽  
Plant Communities ◽  
Diversity Indices ◽  
Salt Lakes ◽  
Andean Region ◽  
Α Diversity ◽  
The Subject ◽  
Species Richness And Abundance ◽  
Floral Assemblage

This paper reports a quantitative survey of the composition, diversity and structure of the plant communities on six islands of Uyuni and Coipasa salt lakes (Bolivia). Plant communities on each island were examined via the use of 10 transects, along which species richness and abundance were recorded. Seventy-one species were found in total, representing pteridophytes (6%), gymnosperms (1%), monocotyledons (14%) and dicotyledons (79%). About 21% of the species were endemic or faced some degree of threat. The calculation of Shannon-Wiener α-diversity indices and comparisons of community structure revealed similarities between the islands. Indeed these analyses suggest the existence of a single floral assemblage; however, small differences in the plant communities were visually identified during fieldwork. These islands are home to a considerable subset of the Altiplano’s flora and appear to have been little disturbed. They should therefore be the subject of surveillance/conservation programs. 

Aquatic and semi aquatic Hemiptera community of Sonebeel, the largest wetland of Assam, northeastern India

2018 ◽  
Vol 10 (13) ◽  
pp. 12792-12799
Author(s):  
Anupama Saha ◽  
Susmita Gupta
Keyword(s):  
Species Richness ◽  
Pest Control ◽  
Relative Abundance ◽  
Species Distribution ◽  
Diversity Indices ◽  
Environmental Data ◽  
Northeastern India ◽  
Ecological Roles

Aquatic and semiaquatic Hemiptera bugs play significant ecological roles, and they are important indicators and pest control agents.  Little information is currently available concerning its populations in southern Assam.  This study assessed hemipterans in four sites of Sonebeel, the largest wetland in Assam (3458.12 ha at full storage level), situated in Karimganj District.  The major inflow and outflow of the wetland are the rivers Singla and Kachua, respectively (the Kachua drains into the Kushiyara River).  Samples were trapped with pond nets and were seasonally recorded.  This study recorded a total of 28 species of aquatic and semiaquatic hemipterans belonging to 20 genera under nine families.  Population, geographical and environmental data (e.g., rainfall) were used to assess the relative abundance of species, species richness and different diversity indices, and species distribution. 

scholarly journals Responses and Indicators of Composition, Diversity, and Productivity of Plant Communities at Different Levels of Disturbance in a Wetland Ecosystem

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 252
Author(s):  
Tingting Duan ◽  
Jing Zhang ◽  
Zhengjun Wang
Keyword(s):  
Plant Community ◽  
Plant Communities ◽  
Leisure Activity ◽  
Local Environment ◽  
Diversity Indices ◽  
Soil Parameters ◽  
Grazing Tolerance ◽  
Organic Matter Concentration ◽  
Drought Tolerant ◽  
Different Levels

Grassland tourism is a very popular leisure activity in many parts of the world. However, the presence of people in these areas causes disturbance to the local environment and grassland resources. This study analyzes the composition, diversity, and productivity under different levels of disturbance of the plant communities in the Kangxi Grassland Tourist Area and the Yeyahu Wetland Nature Reserve of Beijing, China. It aims to identify indicators of plant communities and their responses to different levels of disturbance. Our analysis shows that the plant community density and coverage have a certain compensatory increase under disturbed conditions. With the increase in disturbances, more drought-tolerant species have appeared (increased by 5.7%), some of which have become the grazing-tolerance indicator species in the trampled grazed area (TGA). For plant community productivity, biomass and height are good indicators for distinguishing different disturbances (p < 0.05). In addition, several diversity indices reveal the change of plant communities from different perspectives (three of the four indices were significant at the p < 0.05 level). For soil parameters, soil water content and organic matter concentration help to indicate different disturbance levels (the former has a 64% change). Moreover, the standard deviation of the plant community and soil parameters is also a good indicator of their spatial variability and disturbance levels, especially for the TGA. Our analysis confirms that the indicators of productivity, diversity, and soil parameters can indicate the disturbance level in each subarea from different perspectives. However, under disturbed conditions, a comprehensive analysis of these indicators is needed before we can accurately understand the state of health of the plant community.

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