scholarly journals METAMDB: METABOLIC ATOM MAPPING DATABASE

2021 ◽  
Author(s):  
Collin Starke ◽  
Andre Wegner
Keyword(s):  
Metabolic Flux Analysis ◽  
Metabolic Networks ◽  
Metabolic Flux ◽  
Flux Analysis ◽  
Analysis Software ◽  
13C Metabolic Flux Analysis ◽  
Atom Mapping ◽  
Metabolic Reactions ◽  
Genome Scale ◽  
Mapping Models

MetAMDB (https://metamdb.tu-bs.de/) is an open source metabolic atom mapping database, providing atom mappings for around 75000 metabolic reactions. Each atom mapping can be inspected and downloaded either as a RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome scale) and can subsequently be used in standard 13C metabolic flux analysis software.

scholarly journals 13C metabolic flux analysis at a genome-scale

2015 ◽  
Vol 32 ◽  
pp. 12-22 ◽  
Author(s):  
Saratram Gopalakrishnan ◽  
Costas D. Maranas
Keyword(s):  
Metabolic Flux Analysis ◽  
Metabolic Flux ◽  
Flux Analysis ◽  
13C Metabolic Flux Analysis ◽  
A Genome ◽  
Genome Scale

scholarly journals Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis

Metabolites ◽  
2018 ◽  
Vol 8 (1) ◽  
pp. 3 ◽  
Author(s):  
Tyler Backman ◽  
David Ando ◽  
Jahnavi Singh ◽  
Jay Keasling ◽  
Héctor García Martín
Keyword(s):  
Metabolic Flux Analysis ◽  
Metabolic Flux ◽  
Flux Analysis ◽  
13C Metabolic Flux Analysis ◽  
Scale Models ◽  
Genome Scale ◽  
Bow Tie

scholarly journals Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis

2019 ◽  
Vol 52 ◽  
pp. 303-314 ◽  
Author(s):  
Daniela M. Correia ◽  
Cintia R. Sargo ◽  
Adilson J. Silva ◽  
Sophia T. Santos ◽  
Roberto C. Giordano ◽  
...  
Keyword(s):  
Salmonella Typhimurium ◽  
Metabolic Flux Analysis ◽  
Metabolic Flux ◽  
Flux Analysis ◽  
13C Metabolic Flux Analysis
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