scholarly journals Predicting natural language descriptions of smells

2018 ◽  
Author(s):  
E. Darío Gutiérrez ◽  
Amit Dhurandhar ◽  
Andreas Keller ◽  
Pablo Meyer ◽  
Guillermo A. Cecchi

There has been recent progress in predicting whether common verbal descriptors such as “fishy”, “floral” or “fruity” apply to the smell of odorous molecules. However, the number of descriptors for which such a prediction is possible to date is very small compared to the large number of descriptors that have been suggested for the profiling of smells. We show here that the use of natural language semantic representations on a small set of general olfactory perceptual descriptors allows for the accurate inference of perceptual ratings for mono-molecular odorants over a large and potentially arbitrary set of descriptors. This is a noteworthy approach given that the prevailing view is that human’s capacity to identify or characterize odors by name is poor [1, 2, 3, 4, 5]. Our methods, when combined with a molecule-to-ratings model using chemoinformatic features, also allow for the zero-shot learning inference [6, 7] of perceptual ratings for arbitrary molecules. We successfully applied our semantics-based approach to predict perceptual ratings with an accuracy higher than 0.5 for up to 70 olfactory perceptual descriptors in a well-known dataset, a ten-fold increase in the number of descriptors from previous attempts. Moreover we accurately predict paradigm odors of four common families of molecules with an AUC of up to 0.75. Our approach solves the need for the consuming task of handcrafting domain specific sets of descriptors in olfaction and collecting ratings for large numbers of descriptors and odorants [8, 9, 10, 11] while establishing that the semantic distance between descriptors defines the equivalent of an odorwheel.

2019 ◽  
Vol 16 (5) ◽  
pp. 478-491 ◽  
Author(s):  
Faizan Abul Qais ◽  
Mohd Sajjad Ahmad Khan ◽  
Iqbal Ahmad ◽  
Abdullah Safar Althubiani

Aims: The aim of this review is to survey the recent progress made in developing the nanoparticles as antifungal agents especially the nano-based formulations being exploited for the management of Candida infections. Discussion: In the last few decades, there has been many-fold increase in fungal infections including candidiasis due to the increased number of immunocompromised patients worldwide. The efficacy of available antifungal drugs is limited due to its associated toxicity and drug resistance in clinical strains. The recent advancements in nanobiotechnology have opened a new hope for the development of novel formulations with enhanced therapeutic efficacy, improved drug delivery and low toxicity. Conclusion: Metal nanoparticles have shown to possess promising in vitro antifungal activities and could be effectively used for enhanced and targeted delivery of conventionally used drugs. The synergistic interaction between nanoparticles and various antifungal agents have also been reported with enhanced antifungal activity.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Qingchao Jiang ◽  
Xiaoming Fu ◽  
Shifu Yan ◽  
Runlai Li ◽  
Wenli Du ◽  
...  

AbstractNon-Markovian models of stochastic biochemical kinetics often incorporate explicit time delays to effectively model large numbers of intermediate biochemical processes. Analysis and simulation of these models, as well as the inference of their parameters from data, are fraught with difficulties because the dynamics depends on the system’s history. Here we use an artificial neural network to approximate the time-dependent distributions of non-Markovian models by the solutions of much simpler time-inhomogeneous Markovian models; the approximation does not increase the dimensionality of the model and simultaneously leads to inference of the kinetic parameters. The training of the neural network uses a relatively small set of noisy measurements generated by experimental data or stochastic simulations of the non-Markovian model. We show using a variety of models, where the delays stem from transcriptional processes and feedback control, that the Markovian models learnt by the neural network accurately reflect the stochastic dynamics across parameter space.


2021 ◽  
pp. 016555152199804
Author(s):  
Qian Geng ◽  
Ziang Chuai ◽  
Jian Jin

To provide junior researchers with domain-specific concepts efficiently, an automatic approach for academic profiling is needed. First, to obtain personal records of a given scholar, typical supervised approaches often utilise structured data like infobox in Wikipedia as training dataset, but it may lead to a severe mis-labelling problem when they are utilised to train a model directly. To address this problem, a new relation embedding method is proposed for fine-grained entity typing, in which the initial vector of entities and a new penalty scheme are considered, based on the semantic distance of entities and relations. Also, to highlight critical concepts relevant to renowned scholars, scholars’ selective bibliographies which contain massive academic terms are analysed by a newly proposed extraction method based on logistic regression, AdaBoost algorithm and learning-to-rank techniques. It bridges the gap that conventional supervised methods only return binary classification results and fail to help researchers understand the relative importance of selected concepts. Categories of experiments on academic profiling and corresponding benchmark datasets demonstrate that proposed approaches outperform existing methods notably. The proposed techniques provide an automatic way for junior researchers to obtain organised knowledge in a specific domain, including scholars’ background information and domain-specific concepts.


Circulation ◽  
2014 ◽  
Vol 130 (suppl_2) ◽  
Author(s):  
Shayne Boucher ◽  
Stacy Jones ◽  
David Kuninger ◽  
Mohan Vemuri

Objective: Current protocols for differentiating pluripotent stem cells (PSCs) have led to heterogeneous results, varying purity levels, and long lead times for generation of cardiomyocytes. We hypothesized that a simplified and rapid cardiomyocyte differentiation media system can be developed in a scalable workflow to enable generation of large numbers of consistent, spontaneously active cardiomyocytes that could be used in basic and translational research. Methods: High quality PSCs were maintained under xenofree, feeder-free culture conditions. At time of passaging, PSC were dissociated with 0.5 mM EDTA, seeded on 1:100 Geltrex © -coated surface as small clusters at ~0.5 to 1 x 10 5 /well of a 12-well plate and maintained for four days under serum-free condition. After reaching target confluence of ~60 to 80%, an induction media was added for two days followed by addition of a second induction media for two days. After the induction step, the media was replaced with maintenance media and re-fed every other day for up to five weeks. PSC-derived cardiomyocytes were analyzed by morphology, gene expression, flow cytometry, immunocytochemistry and multi-electrode array (MEA). Results: We observed individual beating cells by Day 7 and contracting syncytia by Day 10. An over 100 fold increase in cell number was noted from the time of plating to generation of contracting syncytia of cardiomyocytes. Quantitative flow cytometry detected populations of troponin T type 2 (TNNT2)-immunoreactive cells that reached as high as 96.6%. Number of TNNT2-positive cells dropped by 20% when induced at 90% versus 60% confluency. PCR studies confirmed expression of mesoderm (T, MIXL1, MESP1), cardiac mesoderm (ISL1, GATA4, MEF2C) and mature cardiomyocyte genes (NKX2.5, TNNT2, MYH6). Immunocytochemistry studies verified expression of cardiac markers NKX2.5,GATA4, MEF2C, TNNT2 and MYH6. Initial MEA studies corroborated the presence of electrically active cells. Conclusions: We conclude that a simplified complete differentiation media system could serve as a standardized culture system for generating large numbers of consistent, spontaneously active cardiomyocytes for basic and translational research studies.


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