scholarly journals Role of thermal fluctuations in biological copying mechanisms

2021 ◽  
Vol 103 (3) ◽  
Author(s):  
Moupriya Das ◽  
Holger Kantz
Keyword(s):  
2007 ◽  
Author(s):  
David P. Wilson ◽  
Todd Lillian ◽  
Sachin Goyal ◽  
Alexei V. Tkachenko ◽  
Noel C. Perkins ◽  
...  

2016 ◽  
Vol 7 ◽  
pp. 328-350 ◽  
Author(s):  
Igor Goychuk

The main physical features and operating principles of isothermal nanomachines in the microworld, common to both classical and quantum machines, are reviewed. Special attention is paid to the dual, constructive role of dissipation and thermal fluctuations, the fluctuation–dissipation theorem, heat losses and free energy transduction, thermodynamic efficiency, and thermodynamic efficiency at maximum power. Several basic models are considered and discussed to highlight generic physical features. This work examines some common fallacies that continue to plague the literature. In particular, the erroneous beliefs that one should minimize friction and lower the temperature for high performance of Brownian machines, and that the thermodynamic efficiency at maximum power cannot exceed one-half are discussed. The emerging topic of anomalous molecular motors operating subdiffusively but very efficiently in the viscoelastic environment of living cells is also discussed.


2015 ◽  
Vol 785 ◽  
pp. 189-218 ◽  
Author(s):  
N. J. Hoh ◽  
R. N. Zia

Hydrodynamic diffusion in the absence of Brownian motion is studied via active microrheology in the ‘pure-hydrodynamic’ limit, with a view towards elucidating the transition from colloidal microrheology to the non-colloidal limit, falling-ball rheometry. The phenomenon of non-Brownian force-induced diffusion in falling-ball rheometry is strictly hydrodynamic in nature; in contrast, analogous force-induced diffusion in colloids is deeply connected to the presence of a diffusive boundary layer even when Brownian motion is very weak compared with the external force driving the ‘probe’ particle. To connect these two limits, we derive an expression for the force-induced diffusion in active microrheology of hydrodynamically interacting particles via the Smoluchowski equation, where thermal fluctuations play no role. While it is well known that the microstructure is spherically symmetric about the probe in this limit, fluctuations in the microstructure need not be – and indeed lead to a diffusive spread of the probe trajectory. The force-induced diffusion is anisotropic, with components along and transverse to the line of external force. The latter is identically zero owing to the fore–aft symmetry of pair trajectories in Stokes flow. In a naïve first approach, the vanishing relative hydrodynamic mobility at contact between the probe and an interacting bath particle was assumed to eliminate all physical contribution from interparticle forces, whereby advection alone drove structural evolution in pair density and microstructural fluctuations. With such an approach, longitudinal force-induced diffusion vanishes in the absence of Brownian motion, a result that contradicts well-known experimental measurements of such diffusion in falling-ball rheometry. To resolve this contradiction, the probe–bath-particle interaction at contact was carefully modelled via an excluded annulus. We find that interparticle forces play a crucial role in encounters between particles in the hydrodynamic limit – as they must, to balance the advective flux. Accounting for this force results in a longitudinal force-induced diffusion $D_{\Vert }=1.26aU_{S}{\it\phi}$, where $a$ is the probe size, $U_{S}$ is the Stokes velocity and ${\it\phi}$ is the volume fraction of bath particles, in excellent qualitative and quantitative agreement with experimental measurements in, and theoretical predictions for, macroscopic falling-ball rheometry. This new model thus provides a continuous connection between micro- and macroscale rheology, as well as providing important insight into the role of interparticle forces for diffusion and rheology even in the limit of pure hydrodynamics: interparticle forces give rise to non-Newtonian rheology in strongly forced suspensions. A connection is made between the flow-induced diffusivity and the intrinsic hydrodynamic microviscosity which recovers a precise balance between fluctuation and dissipation in far from equilibrium suspensions; that is, diffusion and drag arise from a common microstructural origin even far from equilibrium.


1982 ◽  
Vol 25 (4) ◽  
pp. 517-521 ◽  
Author(s):  
S K Samaddar ◽  
D Sperber ◽  
M Zielinska-Pfabé ◽  
M I Sobel

2019 ◽  
pp. 111-176
Author(s):  
Hans-Peter Eckle

Interacting many-particle systems may undergo phase transitions and exhibit critical phenomena in the limit of infinite system size, while the precursors of these phenomena are studied in the theory of finite-size scaling. After surveying the basic notions of phases, phase diagrams, and phase transitions, this chapter focuses on critical behaviour at a second-order phase transition. The Landau-Ginzburg theory and the concept of scaling prepare readers for an elementary introduction to the concepts of the renormalization group, followed by an introduction into the field of quantum phase transitions where quantum fluctuations take over the role of thermal fluctuations.


2010 ◽  
Vol 25 (12) ◽  
pp. 2251-2263 ◽  
Author(s):  
C.E. Packard ◽  
O. Franke ◽  
E.R. Homer ◽  
C.A. Schuh

Low-load nanoindentation can be used to assess not only the plastic yield point, but the distribution of yield points in a material. This paper reviews measurements of the so-called nanoscale strength distribution (NSD) on two classes of materials: crystals and metallic glasses. In each case, the yield point has a significant spread (10–50% of the mean normalized stress), but the origins of the distribution are shown to be very different in the two materials classes. In crystalline materials the NSD can arise from thermal fluctuations and is attended by significant rate and temperature dependence. In metallic glasses well below their glass-transition temperature, the NSD is reflective of fluctuations in the sampled structure and is not very sensitive to rate or temperature. Computer simulations using shear transformation zone dynamics are used to separate the effects of thermal and structural fluctuations in metallic glasses, and support the latter as dominating the NSD of those materials at low temperatures. Finally, the role of the NSD as a window on structural changes due to annealing or prior deformation is discussed as a direction for future research on metallic glasses in particular.


JACS Au ◽  
2021 ◽  
Author(s):  
Wan-Lu Li ◽  
Christianna N. Lininger ◽  
Kaixuan Chen ◽  
Valerie Vaissier Welborn ◽  
Elliot Rossomme ◽  
...  

2020 ◽  
Vol 402 ◽  
pp. 132241 ◽  
Author(s):  
Kiran Narayanan ◽  
Ravi Samtaney
Keyword(s):  

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