With the development of a new round of science and technology (S&T) revolution and industrial transformation in the world, the complexity of S&T decision-making is increasing. It not only needs the comprehensive participation of scientific, technological, economic, educational and other social factors but also an effective consultation system to guarantee. To build an effective consultation system for S&T decision-making, a lot of measures can be taken, such as establishing the system of the policy and regulation, perfecting the multi-mode operation system, constructing the support system of talent team, developing of multi-channel financing system, optimizing the system of social public participation and strengthening the system of interactive international cooperation.