scholarly journals Atomic model of human Rcd-1 reveals anarmadillo-like-repeat protein with in vitro nucleic acid binding properties

2007 ◽  
Vol 16 (2) ◽  
pp. 176-188 ◽  
Author(s):  
Robert G. Garces ◽  
Wanda Gillon ◽  
Emil F. Pai
Keyword(s):  
Nucleic Acid ◽  
Atomic Model ◽  
Nucleic Acid Binding ◽  
Binding Properties ◽  
Repeat Protein

Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro

1994 ◽  
Vol 221 (2) ◽  
pp. 749-757 ◽  
Author(s):  
Frank O. FACKELMAYER ◽  
Kirsten DAHM ◽  
Andrea RENZ ◽  
Uwe RAMSPERGER ◽  
Arndt RICHTER
Keyword(s):  
Nucleic Acid ◽  
Nuclear Matrix ◽  
Matrix Protein ◽  
Nucleic Acid Binding ◽  
Nuclear Matrix Protein ◽  
Binding Properties ◽  
Dna And Rna ◽  
Hnrnp U

scholarly journals A non-cleavable hexahistidine affinity tag at the carboxyl-terminus of the HIV-1 Pr55Gag polyprotein alters nucleic acid binding properties

2017 ◽  
Vol 130 ◽  
pp. 137-145 ◽  
Author(s):  
Maria C. Bewley ◽  
Lisa Reinhart ◽  
Matthew S. Stake ◽  
Shorena Nadaraia-Hoke ◽  
Leslie J. Parent ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Carboxyl Terminus ◽  
Nucleic Acid Binding ◽  
Affinity Tag ◽  
Binding Properties ◽  
Hiv 1

scholarly journals In Silico Analysis: Annotations about Structural and Functional Features of DUF 2726 Family Member Proteins

2016 ◽  
pp. 53-58
Author(s):  
SM Sabbir Alam ◽  
M Ruhul Amin ◽  
M Anwar Hossain
Keyword(s):  
Nucleic Acid ◽  
Nuclear Localization ◽  
Nuclear Localization Signal ◽  
Bacterial Species ◽  
Nucleic Acid Binding ◽  
Protein Families ◽  
Binding Properties ◽  
Pfam Database ◽  
Localization Signal ◽  
Functional Features

Domains of unknown functions (DUFs) are a big set of protein families within the Pfam database that includes proteins of unknown function. In the absence of functional information, proteins are classified into different families based on conserved amino acid sequences and are potentially functionally important. In Pfam database, the numbers of families of DUFs are rapidly increasing and in current the fraction of DUF families had increased to about twenty two percent of all protein families. In this study we targeted DUF2726 member proteins which are mainly present in different bacterial species of Gamma-proteobacteria and have a particular domain organization. We analyzed the protein sequences of domain DUF2726 using different computational tools and databases. We found that this domain contains a nuclear localization signal peptide, which is conserved in Escherichia spp. and Shigella spp. It were also predicted that it has nucleic acid binding properties. Analyzing protein-protein interactions functional partners associated with DUF 2726 were revealed. Protein secondary structure, transmembrane helices structure were predicted. We have found that it has gene neighbourhood and co-occurrences with protein RepA and RepB. RepA and RepB are functionally associated with replication. RepA is a replication protein and RepB is a replication regulatory protein. Presence of a nucleic acid binding properties, a nuclear localization signal (NLS) signalling peptide, and possible interaction pattern with replication proteins, conjectures its possible role as a NLS like signalling peptide.Bangladesh J Microbiol, Volume 31, Number 1-2,June-Dec 2014, pp 53-58

scholarly journals In Vitro RNase and Nucleic Acid Binding Activities Implicate Coilin in U snRNA Processing

PLoS ONE ◽  
2012 ◽  
Vol 7 (4) ◽  
pp. e36300 ◽  
Author(s):  
Hanna J. Broome ◽  
Michael D. Hebert
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acid Binding

RPA nucleic acid-binding properties of IFI16-HIN200

2008 ◽  
Vol 1784 (7-8) ◽  
pp. 1087-1097 ◽  
Author(s):  
Hongyue Yan ◽  
Kush Dalal ◽  
Benjamin K. Hon ◽  
Philippe Youkharibache ◽  
Desmond Lau ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acid Binding ◽  
Binding Properties
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