scholarly journals Identification of second arginine-glycine-aspartic acid motif of ovine vitronectin as the complement C9 binding site and its implication in bacterial infection

2017 ◽  
Vol 61 (2) ◽  
pp. 75-84 ◽  
Author(s):  
Rao T. Prasada ◽  
Prasanth T. Lakshmi ◽  
R. Parvathy ◽  
S. Murugavel ◽  
Devi Karuna ◽  
...  
RSC Advances ◽  
2018 ◽  
Vol 8 (47) ◽  
pp. 26517-26522
Author(s):  
Linlin Xie ◽  
Xiaomin Zhi ◽  
Nao Xiao ◽  
Chen-Jie Fang ◽  
Chun-Hua Yan

We demonstrated an easy-to-use strategy to constrain the freedom of an RGD (arginine, glycine, aspartic acid) sequence with gold nanorods.


1995 ◽  
Vol 308 (2) ◽  
pp. 419-423 ◽  
Author(s):  
S W Chenevert ◽  
N G Fossett ◽  
S H Chang ◽  
I Tsigelny ◽  
M E Baker ◽  
...  

We have determined the nucleotide sequences of eight ethyl methanesulphonate-induced mutants in Drosophila alcohol dehydrogenase (ADH), of which six were previously characterized by Hollocher and Place [(1988) Genetics 116, 253-263 and 265-274]. Four of these ADH mutants contain a single amino acid change: glycine-17 to arginine, glycine-93 to glutamic acid, alanine-159 to threonine, and glycine-184 to aspartic acid. Although these mutants are inactive, three mutants (Gly17Arg, Gly93Glu and Gly184Asp) form stable homodimers, as well as heterodimers with wild-type ADH, in which the wild-type ADH subunit retains full enzyme activity [Hollocher and Place (1988) Genetics 116, 265-274]. Interestingly, the Ala159Thr mutant does not form either stable homodimers or heterodimers with wild-type ADH, suggesting that alanine-159 is important in stabilizing ADH dimers. The mutations were analysed in terms of a three-dimensional model of ADH using bacterial 20 beta-hydroxysteroid dehydrogenase and rat dihydropteridine reductase as templates. The model indicates that mutations in glycine-17 and glycine-93 affect the binding of NAD+. It also shows that alanine-159 is part of a hydrophobic anchor on the dimer interface of ADH. Replacement of alanine-159 with threonine, which has a larger side chain and can hydrogen bond with water, is likely to reduce the strength of the hydrophobic interaction. The three-dimensional model shows that glycine-184 is close to the substrate binding site. Replacement of glycine-184 with aspartic acid is likely to alter the position of threonine-186, which we propose hydrogen bonds to the carboxamide moiety of NAD+. Also, the negative charge on the aspartic acid side chain may interact with the substrate and/or residues in the substrate binding site. These mutations provide information about ADH catalysis and the stability of dimers, which may also be useful in understanding homologous dehydrogenases, which include the human 17 beta-hydroxysteroid, 11 beta-hydroxysteroid and 15-hydroxyprostaglandin dehydrogenases.


1997 ◽  
Vol 52 (2) ◽  
pp. 227-236 ◽  
Author(s):  
Dicky G. Abraham ◽  
Elka M. Nutt ◽  
Rodney A. Bednar ◽  
Bohumil Bednar ◽  
Robert J. Gould ◽  
...  

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