Efficient distinction of invasive aquatic plant species from non‐invasive related species using DNA barcoding

2012 ◽  
Vol 13 (1) ◽  
pp. 21-31 ◽  
Author(s):  
R. Ghahramanzadeh ◽  
G. Esselink ◽  
L. P. Kodde ◽  
H. Duistermaat ◽  
J. L. C. H. Valkenburg ◽  
...  
2012 ◽  
Vol 102 ◽  
pp. 56-64 ◽  
Author(s):  
Tenna Riis ◽  
Birgit Olesen ◽  
John S. Clayton ◽  
Carla Lambertini ◽  
Hans Brix ◽  
...  

2019 ◽  
Vol 9 (12) ◽  
pp. 2410 ◽  
Author(s):  
Maharshi Patel ◽  
Shaphan Jernigan ◽  
Rob Richardson ◽  
Scott Ferguson ◽  
Gregory Buckner

Invasive aquatic plant species can expand rapidly throughout water bodies and cause severely adverse economic and ecological impacts. While mechanical, chemical, and biological methods exist for the identification and treatment of these invasive species, they are manually intensive, inefficient, costly, and can cause collateral ecological damage. To address current deficiencies in aquatic weed management, this paper details the development of a small fleet of fully autonomous boats capable of subsurface hydroacoustic imaging (to scan aquatic vegetation), machine learning (for automated weed identification), and herbicide deployment (for vegetation control). These capabilities aim to minimize manual labor and provide more efficient, safe (reduced chemical exposure to personnel), and timely weed management. Geotagged hydroacoustic imagery of three aquatic plant varieties (Hydrilla, Cabomba, and Coontail) was collected and used to create a software pipeline for subsurface aquatic weed classification and distribution mapping. Employing deep learning, the novel software achieved a classification accuracy of 99.06% after training.


EDIS ◽  
2009 ◽  
Vol 2009 (2) ◽  
Author(s):  
Dale H. Habeck ◽  
James P. Cuda

EENY-424, a 4-page illustrated fact sheet by Dale H. Habeck and James P. Cuda, is part of the Featured Creatures collection. It describes this common moth that has been observed to inflict severe damage on the invasive aquatic plant Hygrophila polysperma — its distribution, description, life cycle and biology, hosts, economic importance, and related species. Includes selected references. Published by the UF Department of Entomology and Nematology, February 2009. EENY 424/IN803: Waterlily Leafcutter, Elophila obliteralis (Walker) (Insecta: Lepidoptera: Crambidae: Acentropinae) (ufl.edu)


2009 ◽  
Vol 9 (4) ◽  
pp. 1086-1091 ◽  
Author(s):  
C. C. M. VAN DE WIEL ◽  
J. VAN DER SCHOOT ◽  
J. L. C. H. VAN VALKENBURG ◽  
H. DUISTERMAAT ◽  
M. J. M. SMULDERS

Plants ◽  
2021 ◽  
Vol 10 (10) ◽  
pp. 2199
Author(s):  
Almuthanna K. Alkaraki ◽  
Maisam A. Aldmoor ◽  
Jamil N. Lahham ◽  
Mohammed Awad

Daphne mucronata Royle and Thymelaea hirsuta (L.) Endl both belong to the Thymelaeaceae family. Both species are used traditionally to treat several diseases along with various daily applications by Jordanian Bedouins. Traditionally, those species are identified through personal proficiency, which could be misleading due to human errors or lack of expertise. This study aims to investigate an effective DNA barcoding method to identify and characterize Daphne mucronata Royle and Thymelaea hirsuta plant species at the molecular level. Daphne mucronata Royle and Thymelaea hirsuta were collected from the ancient city of Petra in the Southern part of Jordan. Sequences of candidate DNA barcodes were amplified (rbcL, matK, and rpoC1), sequenced, and aligned to the blastn database. Moreover, the obtained sequences were compared with available sequences of related species at the GenBank database. Our results showed that DNA barcoding successfully identifies the two plant species using any of chloroplast genes (rbcL, matK, or rpoC1). The results emphasize the ability of DNA barcoding for identifying and characterizing different plant species through the recruitment of different barcode loci in molecular identification.


Author(s):  
Almuthanna K. Alkaraki ◽  
Maisam A. Aldmoor ◽  
Jamil N. Lahham ◽  
Shreen D. Nusair

Medicinal plants play an essential role in preventing and treating several diseases. Classical taxonomic tools generally carry out medicinal plant identification and characterization. Unfortunately, conventional methods need well-trained taxonomists and could give a false identity for closely related species. Jordanian flora is rich in a variety of plant species. The phylogeographic architecture of Jordanian medicinal plant samples was not explored yet. This study aims to recruit DNA barcoding using matK, rbcL, and rpoC1 genes to identify different selected medicinal plants species from Jordan. These are Maerua crassifolia, Ziziphus spina-christi, Balanites aegyptiaca, Senna italica, and Moringa peregrina. Plant samples were collected from the Dead Sea area (Jordan), and three DNA barcode regions were amplified, sequenced, and analyzed using different bioinformatic tools. Twelve sequences were obtained and deposited in Genbank . These sequences showed a very good discrimination capacity with sequences retrieved from related species. The phylogenetic analysis illustrated that DNA barcoding could successfully identify the selected medicinal plant species using different chloroplast genes (rbcL, matK, and rpoC1). Further analysis for other plants species is recommended to explore the genetic relationship and the phylogeographic architecture for Jordanian flora.


Weed Science ◽  
2021 ◽  
pp. 1-21
Author(s):  
Erika J. Haug ◽  
Khalied A. Ahmed ◽  
Travis W. Gannon ◽  
Rob J. Richardson

Abstract Additional active ingredients are needed for use in aquatic systems in order to respond to new threats or treatment scenarios, enhance selectivity, reduce use rates, and to mitigate the risk of herbicide-resistance. Florpyrauxifen-benzyl is a new synthetic auxin developed for use as an aquatic herbicide. A study was conducted at North Carolina State University, in which 10 µg L−1 of 25% radiolabeled florpyrauxifen-benzyl was applied to the isolated shoot tissue of ten different aquatic plant species in order to elucidate absorption and translocation patterns in these species. Extremely high levels of shoot absorption were observed for all species and uptake was rapid. Highest shoot absorptions were observed for crested floatingheart [Nymphoides cristata (Roxb.) Kuntze] (A192 =20 µg g−1), dioecious hydrilla [Hydrilla verticillata (L.f.) Royle] (A192 =25.3 µg g−1), variable watermilfoil (Myriophyllum heterophylum Michx.) (A192 =40.1 µg g−1) and Eurasian watermilfoil (Myriophyllum spicatum L.) (A192 =25.3 µg g−1). Evidence of translocation was observed in all rooted species tested with the greatest translocation observed in N. cristata (1.28 µg g-1 at 192 HAT). The results of this study add to the growing body of knowledge surrounding the behavior of this newly registered herbicide within aquatic plants.


Sign in / Sign up

Export Citation Format

Share Document