Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntrophic process

2012 ◽  
Vol 14 (5) ◽  
pp. 1171-1181 ◽  
Author(s):  
Bas M. van der Zaan ◽  
Flávia Talarico Saia ◽  
Alfons J. M. Stams ◽  
Caroline M. Plugge ◽  
Willem M. de Vos ◽  
...  
1998 ◽  
Vol 2 (3-4) ◽  
pp. 159-173 ◽  
Author(s):  
Jonathan M. Weiner ◽  
Terry S. Lauck ◽  
Derek R. Lovley

2008 ◽  
Vol 74 (20) ◽  
pp. 6476-6480 ◽  
Author(s):  
A. R. Oka ◽  
C. D. Phelps ◽  
L. M. McGuinness ◽  
A. Mumford ◽  
L. Y. Young ◽  
...  

ABSTRACT Stable isotope probing (SIP) was used to identify the active members in a benzene-degrading sulfidogenic consortium. SIP-terminal restriction fragment length polymorphism analysis indicated that a 270-bp peak incorporated the majority of the 13C label and is a sequence closely related to that of clone SB-21 (GenBank accession no. AF029045). This target may be an important biomarker for anaerobic benzene degradation in the field.


2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Allan Devanadera ◽  
Felipe Vejarano ◽  
Yu Zhai ◽  
Chiho Suzuki-Minakuchi ◽  
Yoshiyuki Ohtsubo ◽  
...  

Here, we present the complete genome sequence of Azoarcus sp. strain DN11, a denitrifying bacterium capable of anaerobic benzene degradation.


2014 ◽  
Vol 65 (3) ◽  
pp. 1201-1213 ◽  
Author(s):  
Arturo Aburto-Medina ◽  
Andrew S. Ball

2005 ◽  
Vol 71 (9) ◽  
pp. 5427-5432 ◽  
Author(s):  
Romy Chakraborty ◽  
John D. Coates

ABSTRACT Benzene is a highly toxic industrial compound that is essential to the production of various chemicals, drugs, and fuel oils. Due to its toxicity and carcinogenicity, much recent attention has been focused on benzene biodegradation, especially in the absence of molecular oxygen. However, the mechanism by which anaerobic benzene biodegradation occurs is still unclear. This is because until the recent isolation of Dechloromonas strains JJ and RCB no organism that anaerobically degraded benzene was available with which to elucidate the pathway. Although many microorganisms use an initial fumarate addition reaction for hydrocarbon biodegradation, the large activation energy required argues against this mechanism for benzene. Other possible mechanisms include hydroxylation, carboxylation, biomethylation, or reduction of the benzene ring, but previous studies performed with undefined benzene-degrading cultures were unable to clearly distinguish which, if any, of these alternatives is used. Here we demonstrate that anaerobic nitrate-dependent benzene degradation by Dechloromonas strain RCB involves an initial hydroxylation, subsequent carboxylation, and loss of the hydroxyl group to form benzoate. These studies provide the first pure-culture evidence of the pathway of anaerobic benzene degradation. The outcome of these studies also suggests that all anaerobic benzene-degrading microorganisms, regardless of their terminal electron acceptor, may use this pathway.


1999 ◽  
Vol 65 (7) ◽  
pp. 3056-3063 ◽  
Author(s):  
Juliette N. Rooney-Varga ◽  
Robert T. Anderson ◽  
Jocelyn L. Fraga ◽  
David Ringelberg ◽  
Derek R. Lovley

ABSTRACT Microbial community composition associated with benzene oxidation under in situ Fe(III)-reducing conditions in a petroleum-contaminated aquifer located in Bemidji, Minn., was investigated. Community structure associated with benzene degradation was compared to sediment communities that did not anaerobically oxidize benzene which were obtained from two adjacent Fe(III)-reducing sites and from methanogenic and uncontaminated zones. Denaturing gradient gel electrophoresis of 16S rDNA sequences amplified with bacterial orGeobacteraceae-specific primers indicated significant differences in the composition of the microbial communities at the different sites. Most notable was a selective enrichment of microorganisms in the Geobacter cluster seen in the benzene-degrading sediments. This finding was in accordance with phospholipid fatty acid analysis and most-probable-number–PCR enumeration, which indicated that members of the familyGeobacteraceae were more numerous in these sediments. A benzene-oxidizing Fe(III)-reducing enrichment culture was established from benzene-degrading sediments and contained an organism closely related to the uncultivated Geobacter spp. This genus contains the only known organisms that can oxidize aromatic compounds with the reduction of Fe(III). Sequences closely related to the Fe(III) reducer Geothrix fermentans and the aerobe Variovorax paradoxus were also amplified from the benzene-degrading enrichment and were present in the benzene-degrading sediments. However, neither G. fermentans nor V. paradoxusis known to oxidize aromatic compounds with the reduction of Fe(III), and there was no apparent enrichment of these organisms in the benzene-degrading sediments. These results suggest thatGeobacter spp. play an important role in the anaerobic oxidation of benzene in the Bemidji aquifer and that molecular community analysis may be a powerful tool for predicting a site’s capacity for anaerobic benzene degradation.


2013 ◽  
Vol 79 (24) ◽  
pp. 7800-7806 ◽  
Author(s):  
Tian Zhang ◽  
Pier-Luc Tremblay ◽  
Akhilesh Kumar Chaurasia ◽  
Jessica A. Smith ◽  
Timothy S. Bain ◽  
...  

ABSTRACTAnaerobic activation of benzene is expected to represent a novel biochemistry of environmental significance. Therefore, benzene metabolism was investigated inGeobacter metallireducens, the only genetically tractable organism known to anaerobically degrade benzene. Trace amounts (<0.5 μM) of phenol accumulated in cultures ofGeobacter metallireducensanaerobically oxidizing benzene to carbon dioxide with the reduction of Fe(III). Phenol was not detected in cell-free controls or in Fe(II)- and benzene-containing cultures ofGeobacter sulfurreducens, aGeobacterspecies that cannot metabolize benzene. The phenol produced inG. metallireducenscultures was labeled with18O during growth in H218O, as expected for anaerobic conversion of benzene to phenol. Analysis of whole-genome gene expression patterns indicated that genes for phenol metabolism were upregulated during growth on benzene but that genes for benzoate or toluene metabolism were not, further suggesting that phenol was an intermediate in benzene metabolism. Deletion of the genes for PpsA or PpcB, subunits of two enzymes specifically required for the metabolism of phenol, removed the capacity for benzene metabolism. These results demonstrate that benzene hydroxylation to phenol is an alternative to carboxylation for anaerobic benzene activation and suggest that this may be an important metabolic route for benzene removal in petroleum-contaminated groundwaters, in whichGeobacterspecies are considered to play an important role in anaerobic benzene degradation.


2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Siavash Atashgahi ◽  
Bastian Hornung ◽  
Marcelle J. van der Waals ◽  
Ulisses Nunes da Rocha ◽  
Floor Hugenholtz ◽  
...  

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