scholarly journals A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Siavash Atashgahi ◽  
Bastian Hornung ◽  
Marcelle J. van der Waals ◽  
Ulisses Nunes da Rocha ◽  
Floor Hugenholtz ◽  
...  
1998 ◽  
Vol 2 (3-4) ◽  
pp. 159-173 ◽  
Author(s):  
Jonathan M. Weiner ◽  
Terry S. Lauck ◽  
Derek R. Lovley

2012 ◽  
Vol 14 (5) ◽  
pp. 1171-1181 ◽  
Author(s):  
Bas M. van der Zaan ◽  
Flávia Talarico Saia ◽  
Alfons J. M. Stams ◽  
Caroline M. Plugge ◽  
Willem M. de Vos ◽  
...  

2008 ◽  
Vol 74 (20) ◽  
pp. 6476-6480 ◽  
Author(s):  
A. R. Oka ◽  
C. D. Phelps ◽  
L. M. McGuinness ◽  
A. Mumford ◽  
L. Y. Young ◽  
...  

ABSTRACT Stable isotope probing (SIP) was used to identify the active members in a benzene-degrading sulfidogenic consortium. SIP-terminal restriction fragment length polymorphism analysis indicated that a 270-bp peak incorporated the majority of the 13C label and is a sequence closely related to that of clone SB-21 (GenBank accession no. AF029045). This target may be an important biomarker for anaerobic benzene degradation in the field.


2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Allan Devanadera ◽  
Felipe Vejarano ◽  
Yu Zhai ◽  
Chiho Suzuki-Minakuchi ◽  
Yoshiyuki Ohtsubo ◽  
...  

Here, we present the complete genome sequence of Azoarcus sp. strain DN11, a denitrifying bacterium capable of anaerobic benzene degradation.


Author(s):  
Qing Wang ◽  
Miaoyan Yang ◽  
Xin Song ◽  
Shiyue Tang ◽  
Lei Yu

This study was conducted to explore the potential for 1,2-Dibromoethane (EDB) biodegradation by an acclimated microbial consortium under simulated dynamic groundwater conditions. The enriched EDB-degrading consortium consisted of anaerobic bacteria Desulfovibrio, facultative anaerobe Chromobacterium, and other potential EDB degraders. The results showed that the biodegradation efficiency of EDB was more than 61% at 15 °C, and the EDB biodegradation can be best described by the apparent pseudo-first-order kinetics. EDB biodegradation occurred at a relatively broad range of initial dissolved oxygen (DO) from 1.2 to 5.1 mg/L, indicating that the microbial consortium had a strong ability to adapt. The addition of 40 mg/L of rhamnolipid and 0.3 mM of sodium lactate increased the biodegradation. A two-phase biodegradation scheme was proposed for the EDB biodegradation in this study: an aerobic biodegradation to carbon dioxide and an anaerobic biodegradation via a two-electron transfer pathway of dihaloelimination. To our knowledge, this is the first study that reported EDB biodegradation by an acclimated consortium under both aerobic and anaerobic conditions, a dynamic DO condition often encountered during enhanced biodegradation of EDB in the field.


2014 ◽  
Vol 65 (3) ◽  
pp. 1201-1213 ◽  
Author(s):  
Arturo Aburto-Medina ◽  
Andrew S. Ball

2005 ◽  
Vol 71 (9) ◽  
pp. 5427-5432 ◽  
Author(s):  
Romy Chakraborty ◽  
John D. Coates

ABSTRACT Benzene is a highly toxic industrial compound that is essential to the production of various chemicals, drugs, and fuel oils. Due to its toxicity and carcinogenicity, much recent attention has been focused on benzene biodegradation, especially in the absence of molecular oxygen. However, the mechanism by which anaerobic benzene biodegradation occurs is still unclear. This is because until the recent isolation of Dechloromonas strains JJ and RCB no organism that anaerobically degraded benzene was available with which to elucidate the pathway. Although many microorganisms use an initial fumarate addition reaction for hydrocarbon biodegradation, the large activation energy required argues against this mechanism for benzene. Other possible mechanisms include hydroxylation, carboxylation, biomethylation, or reduction of the benzene ring, but previous studies performed with undefined benzene-degrading cultures were unable to clearly distinguish which, if any, of these alternatives is used. Here we demonstrate that anaerobic nitrate-dependent benzene degradation by Dechloromonas strain RCB involves an initial hydroxylation, subsequent carboxylation, and loss of the hydroxyl group to form benzoate. These studies provide the first pure-culture evidence of the pathway of anaerobic benzene degradation. The outcome of these studies also suggests that all anaerobic benzene-degrading microorganisms, regardless of their terminal electron acceptor, may use this pathway.


2015 ◽  
Vol 82 (1) ◽  
pp. 167-173 ◽  
Author(s):  
Daiana de Lima-Morales ◽  
Diego Chaves-Moreno ◽  
Melissa L. Wos-Oxley ◽  
Ruy Jáuregui ◽  
Ramiro Vilchez-Vargas ◽  
...  

ABSTRACTPseudomonas veronii1YdBTEX2, a benzene and toluene degrader, andPseudomonas veronii1YB2, a benzene degrader, have previously been shown to be key players in a benzene-contaminated site. These strains harbor unique catabolic pathways for the degradation of benzene comprising a gene cluster encoding an isopropylbenzene dioxygenase where genes encoding downstream enzymes were interrupted by stop codons. Extradiol dioxygenases were recruited from gene clusters comprising genes encoding a 2-hydroxymuconic semialdehyde dehydrogenase necessary for benzene degradation but typically absent from isopropylbenzene dioxygenase-encoding gene clusters. The benzene dihydrodiol dehydrogenase-encoding gene was not clustered with any other aromatic degradation genes, and the encoded protein was only distantly related to dehydrogenases of aromatic degradation pathways. The involvement of the different gene clusters in the degradation pathways was suggested by real-time quantitative reverse transcription PCR.


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