Critical factors driving aphanomyces damping-off and root disease in clover revealed and explained using linear and generalized linear models and boosted regression trees

2018 ◽  
Vol 67 (6) ◽  
pp. 1374-1387 ◽  
Author(s):  
M. P. You ◽  
K. Rensing ◽  
M. Renton ◽  
M. J. Barbetti
Keyword(s):  
Generalized Linear Models ◽  
Linear Models ◽  
Regression Trees ◽  
Root Disease ◽  
Boosted Regression Trees ◽  
Critical Factors ◽  
Damping Off

scholarly journals A Spatial Approach for Modeling Amphibian Road-Kills: Comparison of Regression Techniques

2021 ◽  
Vol 10 (5) ◽  
pp. 343
Author(s):  
Diana Sousa-Guedes ◽  
Marc Franch ◽  
Neftalí Sillero
Keyword(s):  
Geographically Weighted Regression ◽  
Environmental Variables ◽  
Linear Models ◽  
Model Performance ◽  
Regression Trees ◽  
Additive Models ◽  
Boosted Regression Trees ◽  
Weighted Regression ◽  
Road Kill ◽  
Regression Techniques

Road networks are the main source of mortality for many species. Amphibians, which are in global decline, are the most road-killed fauna group, due to their activity patterns and preferred habitats. Many different methodologies have been applied in modeling the relationship between environment and road-kills events, such as logistic regression. Here, we compared the performance of five regression techniques to relate amphibians’ road-kill frequency to environmental variables. For this, we surveyed three country roads in northern Portugal in search of road-killed amphibians. To explain the presence of road-kills, we selected a set of environmental variables important for the presence of amphibians and the occurrence of road-kills. We compared the performances of five modeling techniques: (i) generalized linear models, (ii) generalized additive models, (iii) random forest, (iv) boosted regression trees, and (v) geographically weighted regression. The boosted regression trees and geographically weighted regression techniques performed the best, with a percentage of deviance explained between 61.8% and 76.6% and between 55.3% and 66.7%, respectively. Moreover, the geographically weighted regression showed a great advantage over the other techniques, as it allows mapping local parameter coefficients as well as local model performance (pseudo-R2). The results suggest that geographically weighted regression is a useful tool for road-kill modeling, as well as to better visualize and map the spatial variability of the models.

scholarly journals The influence of density on survival and larval development in the sea urchin Arbacia dufresnii (Echinodermata: Echinoidea)

2021 ◽  
Vol 69 (Suppl.1) ◽  
pp. 334-345
Author(s):  
Florencia Belén-Chaar ◽  
Jimena Pía-Fernández ◽  
Lucas-R. Sepúlveda ◽  
Tamara Rubilar
Keyword(s):  
Larval Development ◽  
Sea Urchin ◽  
Generalized Linear Models ◽  
Linear Models ◽  
Larval Growth ◽  
Critical Factors ◽  
Larval Culture ◽  
High Culture ◽  
Culture Density ◽  
Larval Condition

Introduction: Density is one of the critical factors in echinoderm larvae for aquaculture purposes. Echinoplutei larvae are very sensitive to overcrowding. High culture density can lead to problems with bacteria or protozoa, decreasing survival and generating abnormal morphotypes. Objective: To evaluate the effect of culture density on survival and larval growth in the sea urchin Arbacia dufresnii. Methods: Two days after fertilization of A. dufresnii we we kept treatments at 1, 3, 5 and 10 larvae.ml-1, with three replicates each. We recorded survival and abnormal morphotypes periodically, as well as growth:somatic rod length, total length, and length of the post oral arms,. we applied generalized linear models. Results: Survival is dependent on density, time and replicates, and their interactions. Larval growth depended on density and time, also with interaction between the variables. The treatment of 5 larvae.ml-1 had the highest survival and larval condition. Conclusions: Larval culture of A. dufresnii had the best results at 5 larvae.ml-1.

Effect of Different Dentifrices, Bleaching with 35% Hydrogen Peroxide, and Red Wine on Surface Color and Roughness of Bovine Enamel

2020 ◽  
Vol 02 ◽  
Author(s):  
RM Garcia ◽  
WF Vieira-Junior ◽  
JD Theobaldo ◽  
NIP Pini ◽  
GM Ambrosano ◽  
...  
Keyword(s):  
Hydrogen Peroxide ◽  
Generalized Linear Models ◽  
Repeated Measures ◽  
Red Wine ◽  
Linear Models ◽  
Artificial Saliva ◽  
Surface Color ◽  
Dental Bleaching ◽  
Surface Alteration ◽  
Bovine Enamel

Objective: To evaluate color and roughness of bovine enamel exposed to dentifrices, dental bleaching with 35% hydrogen peroxide (HP), and erosion/staining by red wine. Methods: Bovine enamel blocks were exposed to: artificial saliva (control), Oral-B Pro-Health (stannous fluoride with sodium fluoride, SF), Sensodyne Repair & Protect (bioactive glass, BG), Colgate Pro-Relief (arginine and calcium carbonate, AR), or Chitodent (chitosan, CHI). After toothpaste exposure, half (n=12) of the samples were bleached (35% HP), and the other half were not (n=12). The color (CIE L*a* b*, ΔE), surface roughness (Ra), and scanning electron microscopy were evaluated. Color and roughness were assessed at baseline, post-dentifrice and/or -dental bleaching, and after red wine. The data were subjected to analysis of variance (ANOVA) (ΔE) for repeated measures (Ra), followed by Tukey ́s test. The L*, a*, and b* values were analyzed by generalized linear models (a=0.05). Results: The HP promoted an increase in Ra values; however, the SF, BG, and AR did not enable this alteration. After red wine, all groups apart from SF (unbleached) showed increases in Ra values; SF and AR promoted decreases in L* values; AR demonstrated higher ΔE values, differing from the control; and CHI decreased the L* variation in the unbleached group. Conclusion: Dentifrices did not interfere with bleaching efficacy of 35% HP. However, dentifrices acted as a preventive agent against surface alteration from dental bleaching (BG, SF, and AR) or red wine (SF). Dentifrices can decrease (CHI) or increase (AR and SF) staining by red wine.

Economic burden of readmission due to postoperative cerebrospinal fluid leak in Chinese patients

2020 ◽  
Vol 9 (16) ◽  
pp. 1105-1115
Author(s):  
Shuqing Wu ◽  
Xin Cui ◽  
Shaoyu Zhang ◽  
Wenqi Tian ◽  
Jiazhen Liu ◽  
...  
Keyword(s):  
Cerebrospinal Fluid ◽  
Generalized Linear Models ◽  
Economic Burden ◽  
Linear Models ◽  
Chinese Patients ◽  
Cerebrospinal Fluid Leakage ◽  
Index Hospitalization ◽  
Real World Data ◽  
Factors Associated ◽  
Hospitalization Cost

Aim: This real-world data study investigated the economic burden and associated factors of readmissions for cerebrospinal fluid leakage (CSFL) post-cranial, transsphenoidal, or spinal index surgeries. Methods: Costs of CSFL readmissions and index hospitalizations during 2014–2018 were collected. Readmission cost was measured as absolute cost and as percentage of index hospitalization cost. Factors associated with readmission cost were explored using generalized linear models. Results: Readmission cost averaged US$2407–6106, 35–94% of index hospitalization cost. Pharmacy costs were the leading contributor. Generalized linear models showed transsphenoidal index surgery and surgical treatment for CSFL were associated with higher readmission costs. Conclusion: CSFL readmissions are a significant economic burden in China. Factors associated with higher readmission cost should be monitored.

Determination of Enzyme or Binding Constants Using Generalized Linear Models, with Particular Reference to Michaelis–Menten Models

1989 ◽  
Vol 78 (5) ◽  
pp. 413-416
Author(s):  
Gerald Van Belle ◽  
Sue Leurgans ◽  
Pat Friel ◽  
Sunwei Guo ◽  
Mark Yerby
Keyword(s):  
Generalized Linear Models ◽  
Linear Models ◽  
Binding Constants

scholarly journals Testing for treatment effect in covariate-adaptive randomized trials with generalized linear models and omitted covariates

2021 ◽  
pp. 096228022110082
Author(s):  
Yang Li ◽  
Wei Ma ◽  
Yichen Qin ◽  
Feifang Hu
Keyword(s):  
Generalized Linear Models ◽  
Treatment Effect ◽  
Linear Models ◽  
Type I Error ◽  
Type I ◽  
Test Statistic ◽  
Asymptotic Results ◽  
Adaptive Randomization ◽  
Adjustment Method ◽  
Inflated Type

Concerns have been expressed over the validity of statistical inference under covariate-adaptive randomization despite the extensive use in clinical trials. In the literature, the inferential properties under covariate-adaptive randomization have been mainly studied for continuous responses; in particular, it is well known that the usual two-sample t-test for treatment effect is typically conservative. This phenomenon of invalid tests has also been found for generalized linear models without adjusting for the covariates and are sometimes more worrisome due to inflated Type I error. The purpose of this study is to examine the unadjusted test for treatment effect under generalized linear models and covariate-adaptive randomization. For a large class of covariate-adaptive randomization methods, we obtain the asymptotic distribution of the test statistic under the null hypothesis and derive the conditions under which the test is conservative, valid, or anti-conservative. Several commonly used generalized linear models, such as logistic regression and Poisson regression, are discussed in detail. An adjustment method is also proposed to achieve a valid size based on the asymptotic results. Numerical studies confirm the theoretical findings and demonstrate the effectiveness of the proposed adjustment method.

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