scholarly journals Diversity of Bacterial Endosymbionts of Environmental Acanthamoeba Isolates

2008 ◽  
Vol 74 (18) ◽  
pp. 5822-5831 ◽  
Author(s):  
Stephan Schmitz-Esser ◽  
Elena R. Toenshoff ◽  
Susanne Haider ◽  
Eva Heinz ◽  
Verena M. Hoenninger ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Global Distribution ◽  
Free Living ◽  
Obligate Intracellular ◽  
Bacterial Endosymbionts ◽  
Evolutionary Lineages

ABSTRACT Free-living amoebae are frequent hosts for bacterial endosymbionts. In this study, the symbionts of eight novel environmental Acanthamoeba strains isolated from different locations worldwide were characterized. Phylogenetic analysis revealed that they were related to one of four evolutionary lineages of amoeba symbionts recognized previously. This study provides evidence for the existence of only a small number of phylogenetically well-separated groups of obligate intracellular endosymbionts of acanthamoebae with global distribution.

Two new freshwater planarian species (Platyhelminthes: Tricladida: Dugesiidae) partially sympatric in Argentinean Patagonia

2021 ◽  
pp. 269-278
Author(s):  
M. Lenguas Francavilla ◽  
L. Negrete ◽  
A. Martínez-Aquino ◽  
C. Damborenea ◽  
F. Brusa
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Data ◽  
Neotropical Region ◽  
Free Living ◽  
Mitochondrial Coi ◽  
Argentinean Patagonia ◽  
The Family ◽  
Taxonomic Approach ◽  
Morphological And Molecular Data ◽  
Endemic Flora

Girardia Ball, 1974 is the most diverse and widely distributed genus of the family Dugesiidae (Platyhelminthes: Continenticola) in the Neotropical region. Seven out of the 52 species of the genus are known for Argentina. The Somuncurá Plateau is a region in northern Patagonia with several endemic flora and fauna, but little is known about the free-living Platyhelminthes. We describe two new species of Girardia partially inhabiting in sympatry in the Somuncurá Plateau: Girardia somuncura sp. nov. and Girardia tomasi sp. nov. The identification criteria that we followed was an integrative taxonomic approach based on morphological and molecular data. Thus, we used anatomical features focused on the reproductive system, together with a phylogenetic analysis, using a mitochondrial (COI barcode region) genetic marker. This study is the first phylogenetic analysis of the genus Girardia in which we include the southernmost representatives of America here described, thus making it possible to incorporate them in global phylogenies.

The enigmatic diapsid Acerosodontosaurus piveteaui (Reptilia: Neodiapsida) from the Upper Permian of Madagascar and the paraphyly of “younginiform” reptiles

2009 ◽  
Vol 46 (9) ◽  
pp. 651-661 ◽  
Author(s):  
Constanze Bickelmann ◽  
Johannes Müller ◽  
Robert R. Reisz
Keyword(s):  
Phylogenetic Analysis ◽  
Data Matrix ◽  
Upper Permian ◽  
Phylogenetic Position ◽  
Ancestral Condition ◽  
Phylogenetic Data ◽  
First Time ◽  
Evolutionary Lineages

A restudy of the Upper Permian diapsid Acerosodontosaurus piveteaui from Madagascar indicates that the bone formerly identified as the quadratojugal is a fragment of a rib. This in turn implies that, in contrast to previous studies, the lower temporal arcade must be considered incomplete and derived relative to the ancestral condition. Since the phylogenetic position of Acerosodontosaurus is poorly understood, the taxon was entered into a modified phylogenetic data matrix of diapsid reptiles, and the purported monophyly of “Younginiformes” was tested for the first time by including all potential members of the clade as separate taxa, as well as other taxa from the same deposits. The results of the phylogenetic analysis do not support the monophyly of “younginiform” reptiles. Instead, most taxa cluster unresolved at the base of Neodiapsida, a finding that has important implications for the understanding of early diapsid evolution because it suggests that early neodiapsids represent several distinct evolutionary lineages. Acerosodontosaurus and Hovasaurus do form a clade, a finding consistent with the stratigraphic age and biogeography of these taxa.

scholarly journals Molecular Systematics and Patterns of Diversification in Pyrrhura (Psittacidae), with Special Reference to the Picta-Leucotis Complex

The Auk ◽  
2006 ◽  
Vol 123 (3) ◽  
pp. 660-680 ◽  
Author(s):  
Camila C. Ribas ◽  
Leo Joseph ◽  
Cristina Y. Miyaki
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Molecular Systematics ◽  
Neotropical Forests ◽  
The Third ◽  
Species Pairs ◽  
Age Variation ◽  
Mtdna Diversity ◽  
Almost All ◽  
Evolutionary Lineages

AbstractParakeets in the genus Pyrrhura occur in Amazonia and in almost all other major Neotropical forests. Their uneven distribution (with some widespread and several geographically restricted endemic taxa) and complex patterns of plum- age variation have long generated a confused taxonomy. Several taxonomically difficult polytypic species are usually recognized. Here, we present a mitochondrial DNA (mtDNA) phylogenetic analysis of Pyrrhura, with emphasis on the especially problematic picta-leucotis complex, to provide a more robust basis for interpreting the systematics and historical biogeography of the group. Our main findings are that (1) Pyrrhura can be divided into three main evolutionary lineages, one comprising P. cruentata, an Atlantic Forest endemic, the second comprising the picta-leucotis complex, and the third comprising the remaining species; (2) the traditionally recognized species P. picta and P. leucotis are not monophyletic; and (3) most of the species recognized by Joseph (2000, 2002) are diagnosable as independent evolutionary units, with the exception of the following species pairs: P. snethlageae and P. amazonum, P. leucotis and P. griseipectus, and P. roseifrons and P. peruviana. Other than P. cruentata, the two clades that constitute Pyrrhura appear to have radiated and evolved their present mtDNA diversity over short periods during the Plio-Pleistocene.Sistemática Molecular y Patrones de Diversificación en Pyrrhura (Psittacidae), con Énfasis en el Complejo Picta-Leucotis

scholarly journals New Intranuclear Symbiotic Bacteria from Macronucleus of Paramecium putrinum—“Candidatus Gortzia Yakutica”

Diversity ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 198 ◽  
Author(s):  
Alexandra Y. Beliavskaia ◽  
Alexander V. Predeus ◽  
Sofya K. Garushyants ◽  
Maria D. Logacheva ◽  
Jun Gong ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Life Cycle ◽  
Host Species ◽  
Novel Species ◽  
Symbiotic Bacteria ◽  
Rrna Gene ◽  
Ssu Rrna ◽  
Ssu Rrna Gene ◽  
Obligate Intracellular

Holospora-like bacteria (HLB) are obligate intracellular Alphaproteobacteria, inhabiting nuclei of Paramecium and other ciliates such as “Candidatus Hafkinia” is in Frontonia. The HLB clade is comprised of four genera, Holospora, Preeria, “Candidatus Gortzia”, and “Candidatus Hafkinia”. These bacteria have a peculiar life cycle with two morphological forms and some degree of specificity to the host species and the type of nucleus they inhabit. Here we describe a novel species of HLB—“Candidatus Gortzia yakutica” sp. nov.—a symbiont from the macronucleus of Paramecium putrinum, the first described HLB for this Paramecium species. The new endosymbiont shows morphological similarities with other HLB. The phylogenetic analysis of the SSU rRNA gene places it into the “Candidatus Gortzia” clade.

scholarly journals Confirmation and Phylogenetic Analysis of Rabbit Hemorrhagic Disease Virus in Free-living Rabbits from the Netherlands

2006 ◽  
Vol 42 (4) ◽  
pp. 808-812 ◽  
Author(s):  
M. W. G. van de Bildt ◽  
G. H. van Bolhuis ◽  
F. van Zijderveld ◽  
D. van Riel ◽  
J. M. Drees ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
The Netherlands ◽  
Disease Virus ◽  
Rabbit Hemorrhagic Disease Virus ◽  
Hemorrhagic Disease ◽  
Free Living ◽  
Rabbit Hemorrhagic Disease

scholarly journals Legume Symbiotic Nitrogen Fixation byβ-Proteobacteria Is Widespread inNature

2003 ◽  
Vol 185 (24) ◽  
pp. 7266-7272 ◽  
Author(s):  
Wen-Ming Chen ◽  
Lionel Moulin ◽  
Cyril Bontemps ◽  
Peter Vandamme ◽  
Gilles Béna ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Nitrogen Fixation ◽  
Phylogenetic Tree ◽  
Phylogenetic Diversity ◽  
Symbiotic Nitrogen Fixation ◽  
The Other ◽  
Gene Sequences ◽  
Free Living ◽  
Initial Discovery ◽  
Different Strains

ABSTRACT Following the initial discovery of two legume-nodulating Burkholderia strains (L. Moulin, A. Munive, B. Dreyfus, and C. Boivin-Masson, Nature 411:948-950, 2001), we identified as nitrogen-fixing legume symbionts at least 50 different strains of Burkholderia caribensis and Ralstonia taiwanensis, all belonging to the β-subclass of proteobacteria, thus extending the phylogenetic diversity of the rhizobia. R. taiwanensis was found to represent 93% of the Mimosa isolates in Taiwan, indicating thatβ -proteobacteria can be the specific symbionts of a legume. The nod genes of rhizobial β-proteobacteria (β-rhizobia) are very similar to those of rhizobia from theα -subclass (α-rhizobia), strongly supporting the hypothesis of the unique origin of common nod genes. Theβ -rhizobial nod genes are located on a 0.5-Mb plasmid, together with the nifH gene, in R. taiwanensis and Burkholderia phymatum. Phylogenetic analysis of available nodA gene sequences clustered β-rhizobial sequences in two nodA lineages intertwined with α-rhizobial sequences. On the other hand, theβ -rhizobia were grouped with free-living nitrogen-fixingβ -proteobacteria on the basis of the nifH phylogenetic tree. These findings suggest that β-rhizobia evolved from diazotrophs through multiple lateral nod gene transfers.

scholarly journals Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats

2020 ◽  
Author(s):  
Janine Fritschi ◽  
Hanna Marti ◽  
Helena M.B. Seth-Smith ◽  
Sébastien Aeby ◽  
Gilbert Greub ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Costa Rica ◽  
Environmental Samples ◽  
Mycoplasma Species ◽  
Free Living ◽  
Potential Host ◽  
Hemotropic Mycoplasma ◽  
Total Prevalence ◽  
Vampire Bats ◽  
Sequence Identities

Abstract Background: Bats are hosts for a variety of microorganisms, however, little is known about the presence of Chlamydiales and hemotropic mycoplasmas. This study investigated 475 captive and free-living bats from Switzerland, Germany and Costa Rica for Chlamydiales and hemotropic mycoplasmas by PCR to determine the prevalence and phylogeny of these organisms.Results: Screening for Chlamydiales resulted in a total prevalence of 31.4%. Positive samples originated from captive and free-living bats from all three countries. Sequencing of 15 samples allowed the detection of two phylogenetically distinct groups. These groups share sequence identities to Chlamydiaceae, and to Chlamydia-like organisms including Rhabdochlamydiaceae and unclassified Chlamydiales from environmental samples, respectively.PCR analysis for the presence of hemotropic mycoplasmas resulted in a total prevalence of 0.7%, comprising free-living bats from Germany and Costa Rica. Sequencing and phylogenetic analysis revealed three sequences related to other unidentified mycoplasmas found in vampire bats and Chilean bats.Conclusions: Bats can harbor Chlamydiales and hemotropic mycoplasmas and the newly described sequences in this study indicate that the diversity of these bacteria in bats is much larger than previously thought. Both, Chlamydiales and hemotropic mycoplasmas are not restricted to certain bat species or countries and captive and free-living bats can be colonized. In conclusion, bats represent another potential host or vector for novel, previously unidentified, Chlamydiales and hemotropic mycoplasmas.

Sign in / Sign up

Export Citation Format

Share Document