ABSTRACTHost cell-free (axenic) culture ofCoxiella burnetiiin acidified citrate cysteine medium-2 (ACCM-2) has provided important opportunities for investigating the biology of this naturally obligate intracellular pathogen and enabled the development of tools for genetic manipulation. However, ACCM-2 has complex nutrient sources that preclude a detailed study of nutritional factors required forC. burnetiigrowth. Metabolic reconstruction ofC. burnetiipredicts that the bacterium cannot synthesize all amino acids and therefore must sequester some from the host. To examineC. burnetiiamino acid auxotrophies, we developed a nutritionally defined medium with known amino acid concentrations, termed ACCM-D. Compared to ACCM-2, ACCM-D supported longer logarithmic growth, a more gradual transition to stationary phase, and approximately 5- to 10-fold greater overall replication. Small-cell-variant morphological forms generated in ACCM-D also showed increased viability relative to that generated in ACCM-2. Lack of growth in amino acid-deficient formulations of ACCM-D revealedC. burnetiiauxotrophy for 11 amino acids, including arginine. Heterologous expression ofLegionella pneumophilaargGHinC. burnetiipermitted growth in ACCM-D missing arginine and supplemented with citrulline, thereby providing a nonantibiotic means of selection ofC. burnetiigenetic transformants. Consistent with bioinformatic predictions, the elimination of glucose did not impairC. burnetiireplication. Together, these results highlight the advantages of a nutritionally defined medium in investigations ofC. burnetiimetabolism and the development of genetic tools.IMPORTANCEHost cell-free growth and genetic manipulation ofCoxiella burnetiihave revolutionized research of this intracellular bacterial pathogen. Nonetheless, undefined components of growth medium have made studies ofC. burnetiiphysiology difficult and have precluded the development of selectable markers for genetic transformation based on nutritional deficiencies. Here, we describe a medium, containing only amino acids as the sole source of carbon and energy, which supports robust growth and improved viability ofC. burnetii. Growth studies confirmed thatC. burnetiicannot replicate in medium lacking arginine. However, genetic transformation of the bacterium with constructs containing the last two genes in theL. pneumophilaarginine biosynthesis pathway (argGH) allowed growth on defined medium missing arginine but supplemented with the arginine precursor citrulline. Our results advance the field by facilitating studies ofC. burnetiimetabolism and allowing non-antibiotic-based selection ofC. burnetiigenetic transformants, an important achievement considering that selectable makers based on antibiotic resistance are limited.