scholarly journals A Novel Agarolytic β-Galactosidase Acts on Agarooligosaccharides for Complete Hydrolysis of Agarose into Monomers

2014 ◽  
Vol 80 (19) ◽  
pp. 5965-5973 ◽  
Author(s):  
Chan Hyoung Lee ◽  
Hee Taek Kim ◽  
Eun Ju Yun ◽  
Ah Reum Lee ◽  
Sa Rang Kim ◽  
...  

ABSTRACTMarine red macroalgae have emerged to be renewable biomass for the production of chemicals and biofuels, because carbohydrates that form the major component of red macroalgae can be hydrolyzed into fermentable sugars. The main carbohydrate in red algae is agarose, and it is composed ofd-galactose and 3,6-anhydro-l-galactose (AHG), which are alternately bonded by β1-4 and α1-3 linkages. In this study, a novel β-galactosidase that can act on agarooligosaccharides (AOSs) to release galactose was discovered in a marine bacterium (Vibriosp. strain EJY3); the enzyme is annotated asVibriosp. EJY3 agarolytic β-galactosidase (VejABG). Unlike thelacZ-encoded β-galactosidase fromEscherichia coli,VejABG does not hydrolyze common substrates like lactose and can act only on the galactose moiety at the nonreducing end of AOS. The optimum pH and temperature ofVejABG on an agarotriose substrate were 7 and 35°C, respectively. Its catalytic efficiency with agarotriose was also similar to that with agaropentaose or agaroheptaose. Since agarotriose lingers as the unreacted residual oligomer in the currently available saccharification system using β-agarases and acid prehydrolysis, the agarotriose-hydrolyzing capability of this novel β-galactosidase offers an enormous advantage in the saccharification of agarose or agar in red macroalgae for its use as a biomass feedstock for fermentable sugar production.

2020 ◽  
Vol 64 (9) ◽  
Author(s):  
Paola Sandra Mercuri ◽  
Roberto Esposito ◽  
Sylvie Blétard ◽  
Stefano Di Costanzo ◽  
Mariagrazia Perilli ◽  
...  

ABSTRACT Analysis of the genome sequence of Yersinia mollaretii ATCC 43969 identified the blaYEM gene, encoding YEM-1, a putative subclass B2 metallo-β-lactamase. The objectives of our work were to produce and purify YEM-1 and to complete its kinetic characterization. YEM-1 displayed the narrowest substrate range among known subclass B2 metallo-β-lactamases, since it can hydrolyze imipenem, but not other carbapenems, such as biapenem, meropenem, doripenem, and ertapenem, with high catalytic efficiency. A possible explanation of this activity profile is the presence of tyrosine at residue 67 (loop L1), threonine at residue 156 (loop L2), and serine at residue 236 (loop L3). We showed that replacement of Y67 broadened the activity profile of the enzyme for all carbapenems but still resulted in poor activity toward the other β-lactam classes.


Author(s):  
Lei Shi ◽  
Kunlian Mo ◽  
Shixiang Bao ◽  
Qingjuan Wu ◽  
Chunmei Xue ◽  
...  

A Gram-stain-negative, non-motile, ellipsoid bacterium, designated HB182678T, was isolated from brown alga collected from Hainan province, PR China. Growth was observed at 10–50 °C (optimum 37–40 °C), at pH 6–10 (optimum pH 8) and in the presence of 0.5–13% (w/v) NaCl (optimum, 2–4%). The predominant isoprenoid quinone was Q-10 and the major fatty acids were C18 : 1 ω7c, C16 : 0, C18 : 0 and C19 : 0 cyclo ω8c. The polar lipids contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylmethylethanolamine, an unidentified phospholipid, two unidentified glycolipids and three unidentified aminophospholipids. The size of the draft genome was 4.40 Mbp with G+C content 68.8 mol%. Phylogenetic analysis of 16S rRNA gene sequence indicated that strain HB182678T belonged to the genus Mangrovicoccus , and the closest phylogenetically related species was Mangrovicoccus ximenensis T1lg56T (with the similarity of 96.3%). Whole genome average nucleotide identity (ANI) value between them was 84.3% and in silico DNA–DNA hybridization value was 27.2%. The combined phylogenetic relatedness, phenotypic and genotypic features supported the conclusion that strain HB182678T represents a novel species of the genus Mangrovicoccus , for which the name Mangrovicoccus algicola sp. nov. is proposed. The type strain is HB182678T (=MCCC 1K04624T=KCTC 82318T).


2011 ◽  
Vol 77 (10) ◽  
pp. 3343-3350 ◽  
Author(s):  
Darshan H. Patel ◽  
Seung Gon Wi ◽  
Seong-Gene Lee ◽  
Dae-Seok Lee ◽  
Youn-ho Song ◽  
...  

ABSTRACTEnzymatic processes are useful for industrially important sugar production, andin vitrotwo-step isomerization has proven to be an efficient process in utilizing readily available sugar sources. A hypothetical uncharacterized protein encoded byydaEofBacillus licheniformiswas found to have broad substrate specificities and has shown high catalytic efficiency ond-lyxose, suggesting that the enzyme isd-lyxose isomerase.Escherichia coliBL21 expressing the recombinant protein, of 19.5 kDa, showed higher activity at 40 to 45°C and pH 7.5 to 8.0 in the presence of 1.0 mM Mn2+. The apparentKmvalues ford-lyxose andd-mannose were 30.4 ± 0.7 mM and 26 ± 0.8 mM, respectively. The catalytic efficiency (kcat/Km) for lyxose (3.2 ± 0.1 mM−1s−1) was higher than that ford-mannose (1.6 mM−1s−1). The purified protein was applied to the bioproduction ofd-lyxose andd-glucose fromd-xylose andd-mannose, respectively, along with the thermostable xylose isomerase ofThermus thermophilusHB08. From an initial concentration of 10 mMd-lyxose andd-mannose, 3.7 mM and 3.8 mMd-lyxose andd-glucose, respectively, were produced by two-step isomerization. This two-step isomerization is an easy method forin vitrocatalysis and can be applied to industrial production.


2013 ◽  
Vol 9 (1) ◽  
pp. 65-70 ◽  
Author(s):  
A. Mohammed ◽  
S.B. Oyeleke . ◽  
E.C. Egwim .

2021 ◽  
pp. 101299
Author(s):  
Ranjna Sirohi ◽  
Jai Prakash Pandey ◽  
Ayon Tarafdar ◽  
Pooja Sharma ◽  
Poonam Sharma ◽  
...  

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