scholarly journals Whole-Genome Sequences of Burkholderia pseudomallei Isolates Exhibiting Decreased Meropenem Susceptibility

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Erin P. Price ◽  
Melissa Laird Smith ◽  
Ellen E. Paxinos ◽  
Luke J. Tallon ◽  
Lisa Sadzewicz ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Quality Standard ◽  
Resistance Mechanisms ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
High Quality Standard

ABSTRACT We report here paired isogenic Burkholderia pseudomallei genomes obtained from three patients receiving intravenous meropenem for melioidosis treatment, with post-meropenem isolates developing decreased susceptibility. Two genomes were finished, and four were drafted to improved high-quality standard. These genomes will be used to identify meropenem resistance mechanisms in B. pseudomallei.

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (19) ◽  
Author(s):  
Pooja N. Patel ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Lori A. Rowe ◽  
Dhwani Batra ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Foodborne Pathogen ◽  
Severe Illness ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Sequencing Platform

ABSTRACT Shiga toxin-producing Escherichia coli (STEC) is an enteric foodborne pathogen that can cause mild to severe illness. Here, we report the availability of high-quality whole-genome sequences for 77 STEC strains generated using the PacBio sequencing platform.

scholarly journals High-Quality Whole-Genome Sequences for 59 HistoricalShigellaStrains Generated with PacBio Sequencing

2018 ◽  
Vol 6 (15) ◽  
pp. e00282-18 ◽  
Author(s):  
Justin Kim ◽  
Rebecca L. Lindsey ◽  
Lisley Garcia-Toledo ◽  
Vladimir N. Loparev ◽  
Lori A. Rowe ◽  
...  
Keyword(s):  
Enteric Pathogens ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type

ABSTRACTShigellaspp. are enteric pathogens that cause shigellosis. We report here the high-quality whole-genome sequences of 59 historicalShigellastrains that represent the four species and a variety of serotypes.

scholarly journals High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Dhwani Batra ◽  
Lori Rowe ◽  
Vladimir N. Loparev ◽  
Phalasy Juieng ◽  
...  
Keyword(s):  
Draft Genome ◽  
Shigella Sonnei ◽  
Whole Genome ◽  
Drug Resistant ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Genome Maps ◽  
Public Health Challenge

ABSTRACT Drug-resistant Shigella sonnei poses a clinical and public health challenge. We report here the high-quality draft whole-genome sequences of four outbreak-associated S. sonnei isolates; three were resistant to two or more antibiotics, and one was resistant to streptomycin only.

scholarly journals Whole-Genome Sequences of Eight Clinical Isolates of Burkholderia pseudomallei from Melioidosis Patients in Eastern Sri Lanka

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Himali S. Jayasinghearachchi ◽  
Enoka M. Corea ◽  
Shivankari Krishnananthasivam ◽  
Harindra D. Sathkumara ◽  
Vaithehi R. Francis ◽  
...  
Keyword(s):  
Sri Lanka ◽  
Burkholderia Pseudomallei ◽  
Clinical Isolates ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type

Here, we report whole-genome sequences (WGS) of eight clinical isolates of Burkholderia pseudomallei obtained from melioidosis patients with sepsis in eastern Sri Lanka.

scholarly journals Draft Genome Sequences of Xylella fastidiosa subsp. fastidiosa Strains OK3, VB11, and NOB1, Isolated from Bunch and Muscadine Grapes Grown in Southern Mississippi

2020 ◽  
Vol 9 (25) ◽  
Author(s):  
Olga V. Mavrodi ◽  
Dmitri V. Mavrodi ◽  
Eric T. Stafne ◽  
John J. Adamczyk ◽  
Ebrahiem M. Babiker
Keyword(s):  
Xylella Fastidiosa ◽  
Draft Genome ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
Muscadine Grape ◽  
Genome Assemblies ◽  
Muscadine Grapes

ABSTRACT We report here high-quality draft whole-genome assemblies of Xylella fastidiosa subsp. fastidiosa strains OK3, VB11, and NOB1, which were isolated from symptomatic bunch and muscadine grape plants grown in southern Mississippi.

scholarly journals Whole-Genome Sequencing of Lactobacillus salivarius Strains BCRC 14759 and BCRC 12574

2017 ◽  
Vol 5 (47) ◽  
Author(s):  
Shih-Hau Chiu ◽  
Chien-Chi Chen ◽  
Li-Ting Wang ◽  
Lina Huang
Keyword(s):  
Dairy Product ◽  
Human Saliva ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Lactobacillus Salivarius ◽  
Content Type ◽  
Sequencing Platform ◽  
Fermented Dairy

ABSTRACTLactobacillus salivariusBCRC 14759 has been identified as a high-exopolysaccharide-producing strain with potential as a probiotic or fermented dairy product. Here, we report the genome sequences ofL. salivariusBCRC 14759 and the comparable strain BCRC 12574, isolated from human saliva. The PacBio RSII sequencing platform was used to obtain high-quality assemblies for characterization of this probiotic candidate.

scholarly journals Comparison of Whole-Genome Sequences from Two Colony Morphovars of Burkholderia pseudomallei

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Pei-Tan Hsueh ◽  
Yao-Shen Chen ◽  
Hsi-Hsu Lin ◽  
Pei-Ju Liu ◽  
Wen-Fan Ni ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Repeated Sequences ◽  
Whole Genome ◽  
Genome Sequences ◽  
Single Base

The entire genomes of two isogenic morphovars (vgh16W and vgh16R) of Burkholderia pseudomallei were sequenced. A comparison of the sequences from both strains indicates that they show 99.99% identity, are composed of 22 tandem repeated sequences with <100 bp of indels, and have 199 single-base variants.

scholarly journals Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei: TABLE 1

2015 ◽  
Vol 3 (1) ◽  
Author(s):  
Shannon L. Johnson ◽  
Anthony L. Baker ◽  
Patrick S. Chain ◽  
Bart J. Currie ◽  
Hajnalka E. Daligault ◽  
...  
Keyword(s):  
Burkholderia Pseudomallei ◽  
Clinical Isolates ◽  
Whole Genome ◽  
Genome Sequences

scholarly journals Draft Genome Sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, Novel Potential Probiotic Strains for Honeybees (Apis mellifera L.)

2018 ◽  
Vol 7 (6) ◽  
Author(s):  
Marcela Carina Audisio ◽  
Leonardo Albarracín ◽  
Maria Julia Torres ◽  
Lucila Saavedra ◽  
Elvira Maria Hebert ◽  
...  
Keyword(s):  
Apis Mellifera ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Whole Genome ◽  
Genome Sequences ◽  
Lactobacillus Johnsonii ◽  
Lactobacillus Salivarius ◽  
Content Type ◽  
Probiotic Strains

This report describes the draft genome sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, probiotic strains isolated from the gut of honeybee Apis mellifera workers. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with total sizes of 2,054,490 and 2,137,413 bp for the A3iob and CRL1647 strains, respectively.

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