scholarly journals Draft Genome Sequence of Thermodesulfovibrio aggregans TGE-P1 T , an Obligately Anaerobic, Thermophilic, Sulfate-Reducing Bacterium in the Phylum Nitrospirae

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Norihisa Matsuura ◽  
Akiko Ohashi ◽  
Dieter M. Tourlousse ◽  
Yuji Sekiguchi
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Obligately Anaerobic ◽  
Sulfate Reducing ◽  
Protein Encoding ◽  
Encoding Genes

We report a high-quality draft genome sequence of the type strain (TGE-P1 T ) of Thermodesulfovibrio aggregans , an obligately anaerobic, thermophilic, sulfate-reducing bacterium in the phylum Nitrospirae . The genome comprises 2.00 Mb in 16 contigs (3 scaffolds), has a G+C content of 34.5%, and contains 1,998 predicted protein-encoding genes.

scholarly journals High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)

2013 ◽  
Vol 8 (1) ◽  
pp. 37-46 ◽  
Author(s):  
Erko Stackebrandt ◽  
Olga Chertkov ◽  
Alla Lapidus ◽  
Matt Nolan ◽  
Susan Lucas ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality

scholarly journals Draft Genome Sequence of the Axenic Strain Phormidesmispriestleyi ULC007, a Cyanobacterium Isolated from Lake Bruehwiler (Larsemann Hills, Antarctica)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Yannick Lara ◽  
Benoit Durieu ◽  
Luc Cornet ◽  
Olivier Verlaine ◽  
Rosmarie Rippka ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Axenic Strain ◽  
Larsemann Hills ◽  
Freshwater Cyanobacterium ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT Phormidesmis priestleyi ULC007 is an Antarctic freshwater cyanobacterium. Its draft genome is 5,684,389 bp long. It contains a total of 5,604 protein-encoding genes, of which 22.2% have no clear homologues in known genomes. To date, this draft genome is the first one ever determined for an axenic cyanobacterium from Antarctica.

scholarly journals Draft Genome Sequence of Ezakiella peruensis Strain M6.X2, a Human Gut Gram-Positive Anaerobic Coccus

2018 ◽  
Vol 6 (9) ◽  
pp. e01487-17
Author(s):  
Awa Diop ◽  
Khoudia Diop ◽  
Enora Tomei ◽  
Didier Raoult ◽  
Florence Fenollar ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Draft Genome Sequence ◽  
Human Gut ◽  
Gene Encoding ◽  
Content Type ◽  
Protein Encoding ◽  
Short Palindromic Repeat ◽  
Encoding Genes

ABSTRACT We report here the draft genome sequence of Ezakiella peruensis strain M6.X2T. The draft genome is 1,672,788 bp long and harbors 1,589 predicted protein-encoding genes, including 26 antibiotic resistance genes with 1 gene encoding vancomycin resistance. The genome also exhibits 1 clustered regularly interspaced short palindromic repeat region and 333 genes acquired by horizontal gene transfer.

scholarly journals Draft Genome Sequence of the Hydrogenogenic Carboxydotroph Moorella stamsii DSM 26271

2018 ◽  
Vol 6 (18) ◽  
Author(s):  
Anja Poehlein ◽  
Tim Böer ◽  
Kerrin Steensen ◽  
Rolf Daniel
Keyword(s):  
Carbon Monoxide ◽  
Genome Sequence ◽  
Anaerobic Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Obligate Anaerobic ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT The spore-forming, thermophilic, and obligate anaerobic bacterium Moorella stamsii was isolated from digester sludge. Apart from its ability to use carbon monoxide for growth, M. stamsii harbors several enzymes for the use of different sugars. The draft genome has a size of 3,329 Mb and contains 3,306 predicted protein-encoding genes.

scholarly journals High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1 T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Brian P. Hedlund ◽  
Senthil K. Murugapiran ◽  
Marcel Huntemann ◽  
Alicia Clum ◽  
Manoj Pillay ◽  
...  
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Genome Sequence ◽  
Amino Acid Metabolism ◽  
Acid Metabolism ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Encoding Genes

The draft genome of Kallotenue papyrolyticum JKG1 T , a member of the order Kallotenuales , class Chloroflexia , consists of 4,475,263 bp in 4 contigs and encodes 4,010 predicted genes, 49 tRNA-encoding genes, and 3 rRNA operons. The genome is consistent with a heterotrophic lifestyle including catabolism of polysaccharides and amino acids.

scholarly journals High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Han Ming Gan ◽  
Melvin Vun Jye Lee ◽  
Michael A. Savka
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Hybrid Approach ◽  
Fold Increase ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Content Type ◽  
Allorhizobium Vitis ◽  
Grapevine Crown Gall

Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309T (= ATCC 49767T, = NCPPB 3554T), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N 50 value compared with the previous Illumina-only assembly.

scholarly journals Draft Genome Sequence of Massilia sp. Strain MC02, Isolated from a Sandy Loam Maize Soil

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Rachel Raths ◽  
Vincent Peta ◽  
Heike Bücking
Keyword(s):  
Genome Sequence ◽  
Sandy Loam ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes

From farmed corn soil in California, we isolated and sequenced a new member of the genus Massilia, Massilia sp. strain MC02. Massilia sp. MC02 has an assembled draft genome of 5,023,356 bp with a total of 4,790 protein-encoding genes and 3,028 predicted proteins, 47 tRNA genes, and 2 rRNA operons.

scholarly journals Draft Genome Sequence of the Intimin-Positive Enteropathogenic Escherichia albertii Strain MBT-EA1, Isolated from Lettuce

2018 ◽  
Vol 6 (15) ◽  
pp. e00255-18
Author(s):  
Gregor Fiedler ◽  
Erik Brinks ◽  
Christina Böhnlein ◽  
Gyu-Sung Cho ◽  
Sabrina Koberg ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT The genome of the intimin (eae)-harboring Escherichia albertii strain MBT-EA1, isolated from lettuce in Germany, was sequenced. Sequence analysis showed the assembled draft genome size to be 4,560,948 bp, containing a predicted total of 4,414 protein-encoding genes, 11 rRNAs, and 82 tRNAs. Furthermore, three plasmid sequences were found.

scholarly journals Permanent Draft Genome Sequence forFrankiasp.Strain EI5c, a Single-Spore Isolate of a Nitrogen-Fixing Actinobacterium, Isolated from the Root Nodules ofElaeagnus angustifolia

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Timothy D’Angelo ◽  
Rediet Oshone ◽  
Feseha Abebe-Akele ◽  
Stephen Simpson ◽  
Krystalynne Morris ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Root Nodules ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Single Spore ◽  
Single Spore Isolate ◽  
Protein Encoding ◽  
Candidate Protein ◽  
Encoding Genes

Frankiasp. strain EI5c is a member ofFrankialineage III, which is able to reinfect plants of theEleagnaceae,Rhamnaceae,Myricaceae, andGymnostoma, as well as the genusAlnus. Here, we report the 6.6-Mbp draft genome sequence ofFrankiasp. strain EI5c with a G+C content of 72.14 % and 5,458 candidate protein-encoding genes.

scholarly journals Genome Sequence of the Facultative AnaerobeOerskovia enterophilaDFA-19 (DSM 43852T)

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Vanessa Jag ◽  
Anja Poehlein ◽  
Frank R. Bengelsdorf ◽  
Rolf Daniel ◽  
Peter Dürre
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Soil Bacterium ◽  
Draft Genome Sequence ◽  
Facultative Anaerobe ◽  
Circular Chromosome ◽  
Protein Encoding ◽  
Encoding Genes

Here, we report the draft genome sequence ofOerskovia enterophilaDFA-19 (DSM 43852T), a facultative anaerobe soil bacterium, which was originally isolated from millipede feces and first described asPromicromonospora enterophila. The genome consists of a circular chromosome comprising approximately 4.65 Mb and 4,044 predicted protein-encoding genes.

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