scholarly journals Draft Genome Sequence of Pseudomonas pachastrellae Strain CCUG 46540T, a Deep-Sea Bacterium

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat ◽  
Elena García-Valdés
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Deep Sea ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Philippine Sea

ABSTRACT Pseudomonas pachastrellae strain CCUG 46540T (KMM 330T) was isolated from a deep-sea sponge specimen collected in the Philippine Sea at a depth of 750 m. The draft genome has an estimated size of 4.0 Mb, exhibits a G+C content of 61.2 mol%, and is predicted to encode 3,592 proteins, including pathways for the degradation of aromatic compounds.

scholarly journals Draft Genome Sequence of the Arsenic-Resistant Bacterium Brevundimonas denitrificans TAR-002T

2017 ◽  
Vol 5 (47) ◽  
Author(s):  
Taishi Tsubouchi ◽  
Yukihiro Kaneko
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Resistant Bacterium ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Sea Floor

ABSTRACT We report the 3.2-Mb draft genome sequence of Brevundimonas denitrificans strain TAR-002T, isolated from deep-sea floor sediment. The draft genome sequence of strain TAR-002T consists of 3,231,216 bp in 44 contigs, with a G+C content of 68.47%, 3,866 potential coding sequences (CDSs), 3 rRNAs, and 45 tRNAs.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain NL15-2K, a Degrader of Lignin-Derived Aromatic Compounds, Isolated from Forest Soil

2019 ◽  
Vol 8 (10) ◽  
Author(s):  
Motohiro Nishimura ◽  
Susumu Kawakami ◽  
Hideaki Otsuka
Keyword(s):  
Soil Sample ◽  
Forest Soil ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Streptomyces Sp

Streptomyces sp. strain NL15-2K is a degrader of lignin-derived aromatic compounds and was isolated from a forest soil sample.

scholarly journals Draft Genome Sequence ofSphingorhabdussp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian CoralEunicella labiata

2018 ◽  
Vol 6 (9) ◽  
Author(s):  
Sandra Godinho Silva ◽  
Asunción Lago-Lestón ◽  
Rodrigo Costa ◽  
Tina Keller-Costa
Keyword(s):  
Heavy Metals ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Polycyclic Aromatic Compounds ◽  
Draft Genome Sequence ◽  
Gorgonian Coral ◽  
Content Type ◽  
Polycyclic Aromatic

ABSTRACTHere, we report the draft genome sequence ofSphingorhabdussp. strain EL138, an alphaproteobacterium that shows potential to degrade polycyclic aromatic compounds and to cope with various heavy metals and antibiotics. Moreover, the strain, isolated from the gorgonian coralEunicella labiata, possesses several genes involved in the biosynthesis of polyphosphates, polyketides, and terpenoids.

scholarly journals Draft Genome Sequence of Brevibacillus sp. Strain LEMMJ03, Isolated from an Antarctic Volcano

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Júnia Schultz ◽  
René Kallies ◽  
Ulisses Nunes da Rocha ◽  
Alexandre Soares Rosado
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Draft Genome Sequence ◽  
Deception Island ◽  
Coding Sequences ◽  
Content Type

Here, we announce the draft genome sequence of Brevibacillus sp. strain LEMMJ03, isolated from Whalers Bay sediment (Deception Island, Antarctica). In total, 4,500 coding sequences (CDS), among those 102 coding for tRNAs and 5 for noncoding RNAs (ncRNAs), were predicted from the 4.64-Mb genome. Predicted functions were for bacteriocin and degradation of aromatic compounds.

scholarly journals Draft Genome Sequence of Byssochlamys sp. Isolate BYSS01, a Filamentous Fungus Adapted to the Fuel Environment

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Osman Radwan ◽  
Thusitha S. Gunasekera ◽  
Oscar N. Ruiz
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Filamentous Fungus ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Jet Fuel ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Branched Alkanes

ABSTRACT Byssochlamys sp. isolate BYSS01 (anamorph, Paecilomyces sp.), which was isolated from jet fuel, is highly adapted to grow in hydrocarbons, having predicted genes involved in degradation of n -alkanes, branched alkanes, and aromatic compounds. The draft genome size is estimated at 29 Mb, containing 8,509 proteins.

scholarly journals Draft Genome Sequence of Pseudomonas oceani DSM 100277T, a Deep-Sea Bacterium

2018 ◽  
Vol 6 (15) ◽  
pp. e00254-18 ◽  
Author(s):  
Elena García-Valdés ◽  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deep Seawater ◽  
Coding Sequences ◽  
Content Type ◽  
The Okinawa Trough

ABSTRACT Pseudomonas oceani DSM 100277T was isolated from deep seawater in the Okinawa Trough at 1390 m. P. oceani belongs to the Pseudomonas pertucinogena group. Here, we report the draft genome sequence of P. oceani, which has an estimated size of 4.1 Mb and exhibits 3,790 coding sequences, with a G+C content of 59.94 mol%.

scholarly journals Draft Genome Sequence of Thiobacimonas sp. Strain D13, a Phthalate Ester-Degrading Bacterium Isolated from Deep-Sea Sediments

2019 ◽  
Vol 8 (24) ◽  
Author(s):  
Yang Liu ◽  
Tuyan Luo ◽  
Qiu Lin ◽  
Runying Zeng
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Molecular Mechanisms ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Phthalate Ester ◽  
Content Type ◽  
Southeastern Pacific ◽  
Degrading Bacterium ◽  
Degradation Ability

Thiobacimonas sp. strain D13, newly isolated from the sediments of the southeastern Pacific, can effectively degrade phthalate ester. Here, we report the 5.22-Mbp draft genome sequence of this strain, which will provide insights into the molecular mechanisms underlying its degradation ability.

scholarly journals Draft Genome Sequence of the Bacterium Paraburkholderia aromaticivorans AR20-38, a Gram-Negative, Cold-Adapted Degrader of Aromatic Compounds

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Caroline Poyntner ◽  
Dechao Zhang ◽  
Rosa Margesin
Keyword(s):  
Forest Soil ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
Cold Adapted ◽  
Alpine Forest

ABSTRACT Here, we report the draft genome sequence of Paraburkholderia aromaticivorans strain AR20-38, a cold-adapted Gram-negative bacterium. It was isolated from Alpine forest soil and can degrade a range of aromatic compounds.

scholarly journals Draft Genome Sequence of Mariprofundus micogutta Strain ET2

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Hiroko Makita ◽  
Shinro Nishi ◽  
Yoshihiro Takaki ◽  
Emiko Tanaka ◽  
Takuro Nunoura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Hydrothermal Field ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type

ABSTRACT Mariprofundus micogutta strain ET2 was isolated in 2014 from a deep-sea hydrothermal field on the Bayonnaise Knoll of the Izu-Ogasawara arc. Here, we report its draft genome, which comprises 2,497,805 bp and contains 2,417 predicted coding sequences.

scholarly journals Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain HAB-30

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Fatma Azwani Abdul Aziz ◽  
Kenshi Suzuki ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
Yosuke Tashiro ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Metabolic Pathways ◽  
Chemostat Culture ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Content Type ◽  
Genes Encoding

We report the draft genome sequence of Variovorax boronicumulans strain HAB-30, which was isolated from a phenol-degrading chemostat culture. This strain contains genes encoding a multicomponent type of phenol hydroxylase, with degradation pathways for catechol and other aromatic compounds. The genome sequence will be useful for understanding the metabolic pathways involved in phenol degradation.

Sign in / Sign up

Export Citation Format

Share Document