scholarly journals Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain HAB-30

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Fatma Azwani Abdul Aziz ◽  
Kenshi Suzuki ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
Yosuke Tashiro ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Metabolic Pathways ◽  
Chemostat Culture ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Content Type ◽  
Genes Encoding

We report the draft genome sequence of Variovorax boronicumulans strain HAB-30, which was isolated from a phenol-degrading chemostat culture. This strain contains genes encoding a multicomponent type of phenol hydroxylase, with degradation pathways for catechol and other aromatic compounds. The genome sequence will be useful for understanding the metabolic pathways involved in phenol degradation.

scholarly journals Draft Genome Sequence of Comamonas testosteroni TA441, a Bacterium That Has a Cryptic Phenol Degradation Gene Cluster

2019 ◽  
Vol 8 (39) ◽  
Author(s):  
Hiroyuki Arai ◽  
Masaharu Ishii
Keyword(s):  
Gene Cluster ◽  
Genome Sequence ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comamonas Testosteroni ◽  
Spontaneous Mutations ◽  
Content Type ◽  
Repressor Gene ◽  
Mutant Strains

Comamonas testosteroni TA441 has a complete phenol degradation gene cluster but does not degrade phenol because the cluster is tightly repressed. However, mutant strains that can degrade phenol arise by spontaneous mutations of a repressor gene during incubation with phenol. Here, we report the draft genome sequence of strain TA441.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain NL15-2K, a Degrader of Lignin-Derived Aromatic Compounds, Isolated from Forest Soil

2019 ◽  
Vol 8 (10) ◽  
Author(s):  
Motohiro Nishimura ◽  
Susumu Kawakami ◽  
Hideaki Otsuka
Keyword(s):  
Soil Sample ◽  
Forest Soil ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Streptomyces Sp

Streptomyces sp. strain NL15-2K is a degrader of lignin-derived aromatic compounds and was isolated from a forest soil sample.

scholarly journals Draft Genome Sequence ofSphingorhabdussp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian CoralEunicella labiata

2018 ◽  
Vol 6 (9) ◽  
Author(s):  
Sandra Godinho Silva ◽  
Asunción Lago-Lestón ◽  
Rodrigo Costa ◽  
Tina Keller-Costa
Keyword(s):  
Heavy Metals ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Polycyclic Aromatic Compounds ◽  
Draft Genome Sequence ◽  
Gorgonian Coral ◽  
Content Type ◽  
Polycyclic Aromatic

ABSTRACTHere, we report the draft genome sequence ofSphingorhabdussp. strain EL138, an alphaproteobacterium that shows potential to degrade polycyclic aromatic compounds and to cope with various heavy metals and antibiotics. Moreover, the strain, isolated from the gorgonian coralEunicella labiata, possesses several genes involved in the biosynthesis of polyphosphates, polyketides, and terpenoids.

scholarly journals Draft Genome Sequence of Brevibacillus sp. Strain LEMMJ03, Isolated from an Antarctic Volcano

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Júnia Schultz ◽  
René Kallies ◽  
Ulisses Nunes da Rocha ◽  
Alexandre Soares Rosado
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Draft Genome Sequence ◽  
Deception Island ◽  
Coding Sequences ◽  
Content Type

Here, we announce the draft genome sequence of Brevibacillus sp. strain LEMMJ03, isolated from Whalers Bay sediment (Deception Island, Antarctica). In total, 4,500 coding sequences (CDS), among those 102 coding for tRNAs and 5 for noncoding RNAs (ncRNAs), were predicted from the 4.64-Mb genome. Predicted functions were for bacteriocin and degradation of aromatic compounds.

scholarly journals Draft Genome Sequence of Pseudomonas pachastrellae Strain CCUG 46540T, a Deep-Sea Bacterium

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat ◽  
Elena García-Valdés
Keyword(s):  
Genome Sequence ◽  
Aromatic Compounds ◽  
Deep Sea ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Philippine Sea

ABSTRACT Pseudomonas pachastrellae strain CCUG 46540T (KMM 330T) was isolated from a deep-sea sponge specimen collected in the Philippine Sea at a depth of 750 m. The draft genome has an estimated size of 4.0 Mb, exhibits a G+C content of 61.2 mol%, and is predicted to encode 3,592 proteins, including pathways for the degradation of aromatic compounds.

scholarly journals Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain c24

2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Fatma Azwani Abdul Aziz ◽  
Kenshi Suzuki ◽  
Koki Amano ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Chemostat Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Degradation Mechanisms ◽  
Content Type ◽  
Genome Data ◽  
Xenobiotic Compound

ABSTRACT We report the draft genome sequence of Variovorax boronicumulans strain c24, which was isolated from a soil-inoculated chemostat culture amended with phenol as a sole carbon and energy source. The genome data will provide insights into phenol and other xenobiotic compound degradation mechanisms for bioremediation applications.

scholarly journals Draft Genome Sequence of Comamonas testosteroni R2, Consisting of Aromatic Compound Degradation Genes for Phenol Hydroxylase

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Fatma Azwani ◽  
Kenshi Suzuki ◽  
Masahiro Honjyo ◽  
Yosuke Tashiro ◽  
Hiroyuki Futamata
Keyword(s):  
Continuous Culture ◽  
Gene Cluster ◽  
Aromatic Compound ◽  
Genome Sequence ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comamonas Testosteroni ◽  
Content Type ◽  
Aromatic Compound Degradation

ABSTRACT Comamonas testosteroni strain R2 was isolated from a continuous culture enriched by a low concentration of phenol-oxygenating activities with low K s values (below 1 μM). The draft genome sequence of C. testosteroni strain R2 reported here may contribute to determining the phenol degradation gene cluster.

scholarly journals Draft Genome Sequence of Byssochlamys sp. Isolate BYSS01, a Filamentous Fungus Adapted to the Fuel Environment

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Osman Radwan ◽  
Thusitha S. Gunasekera ◽  
Oscar N. Ruiz
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Filamentous Fungus ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Jet Fuel ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Branched Alkanes

ABSTRACT Byssochlamys sp. isolate BYSS01 (anamorph, Paecilomyces sp.), which was isolated from jet fuel, is highly adapted to grow in hydrocarbons, having predicted genes involved in degradation of n -alkanes, branched alkanes, and aromatic compounds. The draft genome size is estimated at 29 Mb, containing 8,509 proteins.

scholarly journals Draft Genome Sequence of Halomonas titanicae Strain TAT1, a Hydrocarbon-Oxidizing Halophilic Bacterium Isolated from a Petroleum Reservoir in Russia

2020 ◽  
Vol 9 (48) ◽  
Author(s):  
Denis S. Grouzdev ◽  
Diyana S. Sokolova ◽  
Andrey B. Poltaraus ◽  
Tamara N. Nazina
Keyword(s):  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Halophilic Bacterium ◽  
Draft Genome Sequence ◽  
Petroleum Reservoir ◽  
Hypersaline Environments ◽  
Content Type ◽  
Production Water ◽  
Moderately Halophilic Bacterium

ABSTRACT The draft genome sequence of a moderately halophilic bacterium, Halomonas titanicae strain TAT1, isolated from production water of the Romashkinskoe oilfield (Russia) is presented. The genome is annotated for elucidation of the metabolic pathways involved in hydrocarbon degradation and nitrate reduction in petroleum-contaminated hypersaline environments.

scholarly journals Draft Genome Sequence of Prevotella copri Isolated from the Gut of a Healthy Indian Adult

2017 ◽  
Vol 5 (37) ◽  
Author(s):  
Satyabrata Bag ◽  
Tarini Shankar Ghosh ◽  
Bhabatosh Das
Keyword(s):  
Gastrointestinal Tract ◽  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Human Gastrointestinal Tract ◽  
Gram Negative ◽  
Content Type ◽  
Host Physiology

ABSTRACT Prevotella copri, a Gram-negative anaerobic rod-shaped bacterium, is frequently associated with the human gastrointestinal tract and influences host physiology, immunity, and metabolic pathways. In the present study, we report the draft genome sequence of P. copri isolated from the gut of a healthy Indian adult.

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