scholarly journals Complete and Assembled Genome Sequences of Pantoea calida DSM 22759 T and Pantoea gaviniae DSM 22758 T

2018 ◽  
Vol 6 (12) ◽  
Author(s):  
Marc J. A. Stevens ◽  
Katrin Zurfluh ◽  
Roger Stephan
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genomes of Pantoea calida DSM 22759 T and Pantoea gaviniae DSM 22758 T were sequenced using single-molecule real-time sequencing. They consist of a 4.3-Mbp chromosome containing 4,092 genes, of which 3,977 encode proteins, and a 4.5-Mbp chromosome containing 4,236 genes, of which 4,120 encode proteins, respectively.

scholarly journals Five Closed Salmonella enterica Genome Sequences from a 2017–2018 Multistrain, Multistate Kratom Outbreak

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Hallie E. Rauch ◽  
Julie Haendiges ◽  
Maria Balkey ◽  
Maria Hoffmann
Keyword(s):  
Dna Sequencing ◽  
Real Time ◽  
Single Molecule ◽  
Salmonella Enterica ◽  
Genome Sequences ◽  
Circular Chromosome ◽  
Content Type ◽  
Single Plasmid

We report here the closed genomes of Salmonella enterica strains from the 2017–2018 multistrain, multistate kratom outbreak using single-molecule real-time DNA sequencing. Four of the genomes consist of one circular chromosome, and the fifth has a circular chromosome and a single plasmid.

scholarly journals Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Priya DasSarma ◽  
Brian P. Anton ◽  
Satyajit L. DasSarma ◽  
Fabiana L. Martinez ◽  
Daniel Guzman ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Genome Annotation ◽  
Halophilic Archaea ◽  
Salt Mine ◽  
Genome Sequences ◽  
Content Type ◽  
Extremely Halophilic Archaea ◽  
Methylation Patterns

Two extremely halophilic archaea, namely, Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, were isolated from a Bolivian salt mine and their genomes sequenced using single-molecule real-time sequencing. The GC-rich genomes of BOL5-4 and BOL6-1 were 4.6 and 3.8 Mbp, respectively, with large chromosomes and multiple megaplasmids. Genome annotation was incorporated into HaloWeb and methylation patterns incorporated into REBASE.

scholarly journals Complete Genome Sequences of Two Pseudomonas aeruginosa Strains Isolated from Children with Bacteremia

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Luis F. Espinosa-Camacho ◽  
Gabriela Delgado ◽  
Guadalupe Miranda-Novales ◽  
Gloria Soberón-Chávez ◽  
Luis D. Alcaraz ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Real Time ◽  
Mexico City ◽  
Single Molecule ◽  
Complete Genome ◽  
Genome Sequences ◽  
Class 1 Integron ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Class 1

ABSTRACT Two Pseudomonas aeruginosa strains isolated from children with bacteremia in Mexico City were sequenced using PacBio RS-II single-molecule real-time (SMRT) technology. The strains consist of a 7.0- to 7.4-Mb chromosome, with a high content of mobile elements, and variation in the genetic content of class 1 integron In1409.

scholarly journals Complete Genome Sequences of Two Strains of the Meat Spoilage Bacterium Brochothrix thermosphacta Isolated from Ground Chicken

2017 ◽  
Vol 5 (47) ◽  
Author(s):  
George C. Paoli ◽  
Chandi Wijey ◽  
Ly-Huong Nguyen ◽  
Chin-Yi Chen ◽  
Xianghe Yan ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Meat Spoilage ◽  
Brochothrix Thermosphacta ◽  
Long Read ◽  
Spoilage Bacterium

ABSTRACT Brochothrix thermosphacta is an important meat spoilage bacterium. Here we report the genome sequences of two strains of B. thermosphacta isolated from ground chicken. The genome sequences were determined using long-read PacBio single-molecule real-time (SMRT) technology and are the first complete genome sequences reported for B. thermosphacta.

scholarly journals Complete Genome Sequences of Lactobacillus curvatus KG6, L. curvatus MRS6, and Lactobacillus sakei FAM18311, Isolated from Fermented Meat Products

2017 ◽  
Vol 5 (38) ◽  
Author(s):  
Christoph Jans ◽  
Sandra Lagler ◽  
Christophe Lacroix ◽  
Leo Meile ◽  
Marc J. A. Stevens
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Complete Genome ◽  
Meat Products ◽  
Lactobacillus Sakei ◽  
Lactobacillus Curvatus ◽  
Genome Sequences ◽  
Content Type ◽  
Circular Chromosomes

ABSTRACT The genomes of Lactobacillus curvatus KG6, L. curvatus MRS6, and Lactobacillus sakei FAM18311 were sequenced and assembled using PacBio single-molecule real-time (SMRT) technology. The strains were isolated from Swiss fermented meat products. Circular chromosomes were of 1.98 Mbp (KG6), 2.11 Mbp (MRS6), and 1.95 Mbp (FAM18311), with a G+C content of 41.3 to 42.0%.

scholarly journals Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Raffael C. Inglin ◽  
Leo Meile ◽  
Jochen Klumpp ◽  
Marc J. A. Stevens
Keyword(s):  
Real Time ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type

ABSTRACT We present here the complete genome sequence of Lactobacillus plantarum RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing.

scholarly journals Draft Genome Sequences of Two Uncultured Armatimonadetes Associated with a Microcystis sp. (Cyanobacteria) Isolate

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Jason N. Woodhouse ◽  
A. Katharina Makower ◽  
Hans-Peter Grossart ◽  
Elke Dittmann
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Type Strain ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Eutrophic Lake ◽  
Smrt Sequencing ◽  
Genome Sequences ◽  
Terrestrial Environments ◽  
Strain Genome

ABSTRACT Two genome sequences of the phylum Armatimonadetes, derived from terrestrial environments, have been previously described. Here, two additional Armatimonadetes genome sequences were obtained via single-molecule real-time (SMRT) sequencing of an enrichment culture of the bloom-forming cyanobacterium Microcystis sp. isolated from a eutrophic lake (Brandenburg, Germany). The genomes are most closely affiliated with the class Fimbriimonadales, although they are smaller than the 5.6-Mbp type strain genome.

scholarly journals Reevaluation of the Complete Genome Sequence of Magnetospirillum gryphiswaldense MSR-1 with Single-Molecule Real-Time Sequencing Data

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
René Uebe ◽  
Dirk Schüler ◽  
Christian Jogler ◽  
Sandra Wiegand
Keyword(s):  
Single Molecule ◽  
Complete Genome Sequence ◽  
Type Strain ◽  
Point Mutations ◽  
Laboratory Strain ◽  
Sequencing Data ◽  
Genome Sequences ◽  
Content Type ◽  
Magnetospirillum Gryphiswaldense ◽  
Genomic Plasticity

ABSTRACT Magnetospirillum gryphiswaldense is a key organism for understanding magnetosome formation and magnetotaxis. As earlier studies suggested a high genomic plasticity, we (re)sequenced the type strain MSR-1 and the laboratory strain R3/S1. Both sequences differ by only 11 point mutations, but organization of the magnetosome island deviates from that of previous genome sequences.

scholarly journals Complete Genome Sequence of Citricoccus sp. Strain SGAir0253, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Lakshmi Chandrasekaran ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Citricoccus sp. strain SGAir0253 was isolated from indoor air collected in Singapore. Its genome sequence was assembled using single-molecule real-time sequencing. It comprises one chromosome of 3.32 Mb and two plasmids of 137 kb and 99 kb. The genome consists of 2,950 protein-coding genes, 49 tRNAs, and 9 rRNAs.

scholarly journals First Complete Genome Sequences ofStaphylococcus aureussubsp.aureusRosenbach 1884 (DSM 20231T), Determined by PacBio Single-Molecule Real-Time Technology

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
Akino Shiroma ◽  
Yasunobu Terabayashi ◽  
Kazuma Nakano ◽  
Makiko Shimoji ◽  
Hinako Tamotsu ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Complete Genome ◽  
Genome Sequences
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