scholarly journals Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Rituparna Mukhopadhyay ◽  
Joselita Joaquin ◽  
Robin Hogue ◽  
Susan Fitzgerald ◽  
Guillaume Jospin ◽  
...  
Keyword(s):  
Interstitial Lung Disease ◽  
Lung Disease ◽  
Genome Sequence ◽  
Single Molecule ◽  
Whole Genome Sequence ◽  
Sequencing Technology ◽  
Coding Sequences ◽  
Content Type ◽  
The Pacific ◽  
Associated Proteins

ABSTRACT The whole genome sequence of Dolosigranulum pigrum isolated from the blood of a patient with interstitial lung disease was sequenced with the Pacific Biosciences RS II platform. The genome size is 2.1 Mb with 2,127 annotated coding sequences; it contained two clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated proteins (Cas) systems.

scholarly journals Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic Patient with Neurogenic Bladder Using Single-Molecule Real-Time Sequencing Technology

2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Rituparna Mukhopadhyay ◽  
Joselita Joaquin ◽  
Robin Hogue ◽  
Austin Kilaru ◽  
Guillaume Jospin ◽  
...  
Keyword(s):  
Neurogenic Bladder ◽  
Single Molecule ◽  
Gram Negative Bacteria ◽  
Sequencing Technology ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type ◽  
The Pacific ◽  
Quinone Cofactors ◽  
Paraplegic Patient

ABSTRACT The genome of Paenalcaligenes hominis, isolated from a paraplegic patient with neurogenic bladder, was sequenced with the Pacific Biosciences RSII platform. The genome size is 2.68 Mb and includes 3,096 annotated coding sequences, including genes associated with quinone cofactors, which play crucial roles in the virulence of Gram-negative bacteria.

scholarly journals Complete Genome Sequence of Mycoplasma pneumoniae Type 2 Reference Strain FH Using Single-Molecule Real-Time Sequencing Technology

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Heta P. Desai ◽  
Shatavia S. Morrison ◽  
Maureen H. Diaz ◽  
Alvaro J. Benitez ◽  
Bernard J. Wolff ◽  
...  
Keyword(s):  
Mycoplasma Pneumoniae ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Reference Strain ◽  
Sequencing Technology ◽  
Content Type ◽  
The Pacific

ABSTRACT Mycoplasma pneumoniae type 2 strain FH was previously sequenced with Illumina (FH-Illumina) and 454 (FH-454) technologies according to Xiao et al. (2015) and Krishnakumar et al. (2010). Comparative analyses revealed differences in genomic content between these sequences, including a 6-kb region absent from the FH-454 submission. Here, we present a complete genome sequence of FH sequenced with the Pacific Biosciences RSII platform.

scholarly journals First Complete Genome Sequence of Marinilactibacillus piezotolerans Strain 15R, a Marine Lactobacillus Isolated from Coal-Bearing Sediment 2.0 Kilometers below the Seafloor, Determined by PacBio Single-Molecule Real-Time Technology

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Yuli Wei ◽  
Junwei Cao ◽  
Jiasong Fang ◽  
Chiaki Kato ◽  
Weicheng Cui
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Whole Genome Sequence ◽  
Northwestern Pacific ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Subsurface Sediment ◽  
Candidate Protein

ABSTRACT Marinilactibacillus piezotolerans strain 15R is a facultatively anaerobic heterotrophic lactobacillus isolated from deep marine subsurface sediment nearly 2 km below the seafloor in the northwestern Pacific. We report here the first whole-genome sequence of strain 15R. The identified genome sequence has 2,767,908 bp, 35.4% G+C content, and predicted 2,552 candidate protein-coding sequences, with no identified plasmids.

scholarly journals Whole-Genome Sequence of Mycoplasma bovis Strain Ningxia-1

2018 ◽  
Vol 6 (4) ◽  
Author(s):  
Peng Sun ◽  
Haifeng Luo ◽  
Xin Zhang ◽  
Jingyi Xu ◽  
Yanan Guo ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Whole Genome Sequence ◽  
Mycoplasma Bovis ◽  
Sequencing Technology ◽  
Circular Chromosome ◽  
A Genome ◽  
Variable Surface ◽  
Integrative Conjugative Elements ◽  
Single Circular Chromosome

ABSTRACT A genome sequence of the Mycoplasma bovis Ningxia-1 strain was tested by Pacific Biosciences (PacBio) single-molecule real-time (SMRT) sequencing technology. The strain was isolated from a lesioned calf lung in 2013 in Pengyang, Ningxia, China. The single circular chromosome of 1,033,629 bp shows differences between complete Mycoplasma bovis genome in insertion-like sequences (ISs), integrative conjugative elements (ICEs), lipoproteins (LPs), variable surface lipoproteins (VSPs), pathogenicity islands (PAIs), etc.

scholarly journals High-Quality Whole-Genome Sequence of an Estradiol-Degrading Strain, Novosphingobium tardaugens NBRC 16725

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
J. Ibero ◽  
D. Sanz ◽  
B. Galán ◽  
E. Díaz ◽  
J. L. García
Keyword(s):  
Genome Sequence ◽  
Complete Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
High Quality ◽  
Content Type ◽  
Pacific Biosciences ◽  
Degrading Bacterium ◽  
The Pacific

In this work we report the complete sequence and assembly of the estradiol-degrading bacterium Novosphingobium tardaugens NBRC 16725 genome into a single contig using the Pacific Biosciences RS II system.

scholarly journals Complete Genome Sequence of Lactobacillus plantarum Strain JDARSH, Isolated from Sheep Milk

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Abhinandan Patil ◽  
Anamika Dubey ◽  
Muneer Ahmad Malla ◽  
John Disouza ◽  
Shivaji Pawar ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Sheep Milk ◽  
Wide Range ◽  
Range Of Functions

Lactobacillus plantarum strain JDARSH, a potential probiotic with a wide range of functions, was isolated from sheep milk. Here, we report the whole-genome sequence of this bacterium. The draft genome yielded a 3.20-Mb genome and 2,980 protein-coding sequences.

scholarly journals Whole-Genome Sequence of the Fruiting Myxobacterium Cystobacter fuscus DSM 52655

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Anke Treuner-Lange ◽  
Marc Bruckskotten ◽  
Oliver Rupp ◽  
Alexander Goesmann ◽  
Lotte Søgaard-Andersen
Keyword(s):  
Secondary Metabolites ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Fruiting Body Formation ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Body Formation ◽  
Putative Protein

ABSTRACT Among myxobacteria, the genus Cystobacter is known not only for fruiting body formation but also for formation of secondary metabolites, such as cystobactamids and cystothiazols. Here, we present the complete genome sequence of the Cystobacter fuscus strain DSM 52655, which comprises 12,349,744 bp and 9,836 putative protein-coding sequences.

scholarly journals Complete Genome Sequence of Lactobacillus fermentum MTCC 25067 (Formerly TDS030603), a Viscous Exopolysaccharide-Producing Strain Isolated from Indian Fermented Milk

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Ni Putu Desy Aryantini ◽  
Jashbhai B. Prajapati ◽  
Tadasu Urashima ◽  
Kenji Fukuda
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fermented Milk ◽  
Lactobacillus Fermentum ◽  
Sequencing Technology ◽  
Content Type

ABSTRACT Lactobacillus fermentum MTCC 25067 (formerly TDS030603) is capable of producing a highly viscous slime exopolysaccharide. We report here the complete genome sequence of the strain, which was deciphered by using PacBio single-molecule real-time sequencing technology.

scholarly journals Whole-Genome Sequence of Lactobacillus plantarum SPC-SNU 72-2 as a Probiotic Starter for Sourdough Fermentation

2020 ◽  
Vol 9 (42) ◽  
Author(s):  
Seul-Ah Kim ◽  
Geonhee Kim ◽  
Bo Bo ◽  
Sangmin Shim ◽  
Deukbuhm Lee ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Pacific Biosciences ◽  
Microbial Characteristics ◽  
The Pacific

ABSTRACT We report the whole-genome sequence of Lactobacillus plantarum SPC-SNU 72-2, a probiotic starter for sourdough. Genome sequencing was completed using the Pacific Biosciences RS II and Illumina platforms. This study will facilitate the understanding of microbial characteristics of L. plantarum SPC-SNU 72-2 and its roles during sourdough fermentation.

scholarly journals Whole-Genome Sequence of High Salt and Heavy Metal-Tolerant Bacillus stratosphericus Strain 5Co, Isolated from Lichen Usnea florida in Central Florida, United States

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Pushpa Lata ◽  
Subramaniam S. Govindarajan ◽  
Feng Qi ◽  
Jian-Liang Li ◽  
Santosh K. Maurya ◽  
...  
Keyword(s):  
United States ◽  
Heavy Metal ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Coding Sequences ◽  
Content Type ◽  
Central Florida

ABSTRACT Bacillus stratosphericus strain 5Co was isolated from lichen Usnea florida in central Florida, United States. Here, we report a draft genome sequence of this strain, which consists of 159 contigs spanning 3,628,496 bp, with a G+C content of 41.3% and comprises 3,729 predicted coding sequences.

Sign in / Sign up

Export Citation Format

Share Document