scholarly journals First Complete Genome Sequence of Marinilactibacillus piezotolerans Strain 15R, a Marine Lactobacillus Isolated from Coal-Bearing Sediment 2.0 Kilometers below the Seafloor, Determined by PacBio Single-Molecule Real-Time Technology

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Yuli Wei ◽  
Junwei Cao ◽  
Jiasong Fang ◽  
Chiaki Kato ◽  
Weicheng Cui
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Whole Genome Sequence ◽  
Northwestern Pacific ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Subsurface Sediment ◽  
Candidate Protein

ABSTRACT Marinilactibacillus piezotolerans strain 15R is a facultatively anaerobic heterotrophic lactobacillus isolated from deep marine subsurface sediment nearly 2 km below the seafloor in the northwestern Pacific. We report here the first whole-genome sequence of strain 15R. The identified genome sequence has 2,767,908 bp, 35.4% G+C content, and predicted 2,552 candidate protein-coding sequences, with no identified plasmids.

scholarly journals Whole-Genome Sequence of the Fruiting Myxobacterium Cystobacter fuscus DSM 52655

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Anke Treuner-Lange ◽  
Marc Bruckskotten ◽  
Oliver Rupp ◽  
Alexander Goesmann ◽  
Lotte Søgaard-Andersen
Keyword(s):  
Secondary Metabolites ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Fruiting Body Formation ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Body Formation ◽  
Putative Protein

ABSTRACT Among myxobacteria, the genus Cystobacter is known not only for fruiting body formation but also for formation of secondary metabolites, such as cystobactamids and cystothiazols. Here, we present the complete genome sequence of the Cystobacter fuscus strain DSM 52655, which comprises 12,349,744 bp and 9,836 putative protein-coding sequences.

scholarly journals Complete Genome Sequence of Lactobacillus plantarum Strain JDARSH, Isolated from Sheep Milk

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Abhinandan Patil ◽  
Anamika Dubey ◽  
Muneer Ahmad Malla ◽  
John Disouza ◽  
Shivaji Pawar ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Sheep Milk ◽  
Wide Range ◽  
Range Of Functions

Lactobacillus plantarum strain JDARSH, a potential probiotic with a wide range of functions, was isolated from sheep milk. Here, we report the whole-genome sequence of this bacterium. The draft genome yielded a 3.20-Mb genome and 2,980 protein-coding sequences.

scholarly journals Complete Genome Sequence of Leuconostoc kimchii Strain NKJ218, Isolated from Homemade Kimchi

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Ji Young Jung ◽  
Jin-Woo Jeong ◽  
Seung-Young Lee ◽  
Hyun Mi Jin ◽  
Hee Won Choi ◽  
...  
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
A Genome

ABSTRACT Leuconostoc kimchii strain NKJ218 was isolated from homemade kimchi in South Korea. The whole genome was sequenced using the PacBio RS II and Illumina NovoSeq 6000 platforms. Here, we report a genome sequence of strain NKJ218, which consists of a 1.9-Mbp chromosome and three plasmid contigs. A total of 2,005 coding sequences (CDS) were predicted, including 1,881 protein-coding sequences.

scholarly journals Whole-Genome Sequence of Mycobacterium ulcerans CSURP7741, a French Guianan Clinical Isolate

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Jamal Saad ◽  
Marine Combe ◽  
Nassim Hammoudi ◽  
Pierre Couppié ◽  
Romain Blaizot ◽  
...  
Keyword(s):  
Clinical Isolate ◽  
Genome Sequence ◽  
Buruli Ulcer ◽  
Gc Content ◽  
Mycobacterium Ulcerans ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Rna Genes

Combined Nanopore and Illumina whole-genome sequencing of a French Guianan Mycobacterium ulcerans (Buruli ulcer agent) clinical isolate yielded a 5.12-Mbp genome with a 65.5% GC content, 5,215 protein-coding genes, and 51 predicted RNA genes. This publicly available M. ulcerans whole-genome sequence from a strain isolated in South America is closely related to M. ulcerans subsp. liflandii.

scholarly journals Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Martin Hölzer ◽  
Karine Laroucau ◽  
Heather Huot Creasy ◽  
Sandra Ott ◽  
Fabien Vorimore ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Bacterial Species ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Domestic Poultry ◽  
Avian Pathogen

The recently introduced bacterial species Chlamydia gallinacea is known to occur in domestic poultry and other birds. Its potential as an avian pathogen and zoonotic agent is under investigation. The whole-genome sequence of its type strain, 08-1274/3, consists of a 1,059,583-bp chromosome with 914 protein-coding sequences (CDSs) and a plasmid (p1274) comprising 7,619 bp with 9 CDSs.

scholarly journals Complete Genome Sequence of Staphylococcus epidermidis 1457

2017 ◽  
Vol 5 (22) ◽  
Author(s):  
Madeline R. Galac ◽  
Jason Stam ◽  
Rosslyn Maybank ◽  
Mary Hinkle ◽  
Dietrich Mack ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Staphylococcus Epidermidis ◽  
Complete Genome Sequence ◽  
Genetic Manipulation ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Related Research ◽  
Protein Coding Genes

ABSTRACT Staphylococcus epidermidis 1457 is a frequently utilized strain that is amenable to genetic manipulation and has been widely used for biofilm-related research. We report here the whole-genome sequence of this strain, which encodes 2,277 protein-coding genes and 81 RNAs within its 2.4-Mb genome and plasmid.

scholarly journals Whole-Genome Sequence of High Salt and Heavy Metal-Tolerant Bacillus stratosphericus Strain 5Co, Isolated from Lichen Usnea florida in Central Florida, United States

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Pushpa Lata ◽  
Subramaniam S. Govindarajan ◽  
Feng Qi ◽  
Jian-Liang Li ◽  
Santosh K. Maurya ◽  
...  
Keyword(s):  
United States ◽  
Heavy Metal ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Coding Sequences ◽  
Content Type ◽  
Central Florida

ABSTRACT Bacillus stratosphericus strain 5Co was isolated from lichen Usnea florida in central Florida, United States. Here, we report a draft genome sequence of this strain, which consists of 159 contigs spanning 3,628,496 bp, with a G+C content of 41.3% and comprises 3,729 predicted coding sequences.

scholarly journals Whole-Genome Sequence of Corynebacterium pseudotuberculosis PA04, Isolated from the Lymph Node of a Sheep in the Amazon, Brazil

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Wana L. O. Costa ◽  
Jorianne T. C. Alves ◽  
Larissa M. Dias ◽  
Carlos Leonardo de Aragão Araújo ◽  
Eziquiel Morais ◽  
...  
Keyword(s):  
Lymph Node ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Corynebacterium Pseudotuberculosis ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Caseous Lymphadenitis ◽  
Coding Sequences ◽  
Content Type

ABSTRACT This study reports the complete genome sequence of Corynebacterium pseudotuberculosis strain PA04, isolated from a sheep in the Amazon, Brazil. This bacterium is the etiological agent of caseous lymphadenitis. This genome contains 2,338,093 bp, 52.2% G+C content, and a total of 2,104 coding sequences (CDSs), 41 pseudogenes, 12 rRNAs, and 49 tRNAs.

scholarly journals Complete Genome Sequence of Bacillus megaterium Strain TG1-E1, a Plant Drought Tolerance-Enhancing Bacterium

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
Juan Ignacio Vílchez ◽  
Qiming Tang ◽  
Richa Kaushal ◽  
Wei Wang ◽  
Suhui Lv ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Single Molecule ◽  
Bacillus Megaterium ◽  
Dna Sequences ◽  
Complete Genome ◽  
Whole Genome Sequence ◽  
Plant Tolerance ◽  
Protein Coding ◽  
Single Molecule Sequencing ◽  
Content Type

Based on a combination of next-generation sequencing and single-molecule sequencing, we obtained the whole-genome sequence of Bacillus megaterium strain TG1-E1, which is a highly salt-tolerant rhizobacterium that enhances plant tolerance to drought stress. The complete genome is estimated to be approximately 5.48 Mb containing a total of 5,858 predicted protein-coding DNA sequences.

scholarly journals Whole-Genome Sequence of Streptococcus parauberis Strain SP-llh, Isolated from Cows with Mastitis in Western China

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Longhai Liu ◽  
Feng Yang ◽  
Xinpu Li ◽  
Jinyin Luo ◽  
Zhe Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Western China ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Streptococcus Parauberis ◽  
Large Contigs

ABSTRACT Streptococcus parauberis strain SP-llh was isolated from cows with mastitis in western China in 2015. The 2,522,235-bp genome sequence consists of 46 large contigs in 14 scaffolds and contains 2,620 predicted protein-coding genes, with a G+C content of 35.3%.

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