scholarly journals Genome Sequence of the Deep-Sea BacteriumIdiomarina abyssalisKMM 227T

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Bruce A. Rheaume ◽  
Scott Mithoefer ◽  
Kyle S. MacLea
Keyword(s):  
Pacific Ocean ◽  
Sea Level ◽  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
The Pacific ◽  
The Pacific Ocean

Idiomarina abyssalisKMM 227Tis an aerobic flagellar gammaproteobacterium found at a depth of 4,000 to 5,000 m below sea level in the Pacific Ocean. This paper presents a draft genome sequence forI. abyssalisKMM 227T, with a predicted composition of 2,684,812 bp (47.15% G+C content) and 2,611 genes, of which 2,508 were predicted coding sequences.

scholarly journals Draft Genome Sequence of Pacificimonas aurantium Type Strain JLT2012, Isolated from the Seawater of the Pacific Ocean

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Guangrong Tang ◽  
Rong Cui ◽  
Yu Tian ◽  
Xiaopei Lin
Keyword(s):  
Pacific Ocean ◽  
Genome Sequence ◽  
Preliminary Analysis ◽  
Type Strain ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Southeastern Pacific ◽  
The Pacific ◽  
The Pacific Ocean

ABSTRACT Type strain JLT2012 was isolated from the southeastern Pacific. Here, we report the draft genome sequence and the initial findings from a preliminary analysis of strain JLT2012, which represents a novel species and should be classified in the existing genus Pacificimonas.

scholarly journals Draft Genome Sequence of “Candidatus Moanabacter tarae,” Representing a Novel Marine Verrucomicrobial Lineage

2018 ◽  
Vol 7 (15) ◽  
Author(s):  
Julian Vosseberg ◽  
Joran Martijn ◽  
Thijs J. G. Ettema
Keyword(s):  
Pacific Ocean ◽  
Genome Sequence ◽  
Environmental Samples ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Marquesas Islands ◽  
The Pacific ◽  
The Pacific Ocean ◽  
Marine Environmental

The Tara Oceans Consortium has published various metagenomes of marine environmental samples. Here, we report a contig of 2.6 Mbp from the assembly of a sample collected near the Marquesas Islands in the Pacific Ocean, covering a nearly complete novel verrucomicrobial genome.

scholarly journals Draft Genome Sequence of the Arsenic-Resistant Bacterium Brevundimonas denitrificans TAR-002T

2017 ◽  
Vol 5 (47) ◽  
Author(s):  
Taishi Tsubouchi ◽  
Yukihiro Kaneko
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Resistant Bacterium ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Sea Floor

ABSTRACT We report the 3.2-Mb draft genome sequence of Brevundimonas denitrificans strain TAR-002T, isolated from deep-sea floor sediment. The draft genome sequence of strain TAR-002T consists of 3,231,216 bp in 44 contigs, with a G+C content of 68.47%, 3,866 potential coding sequences (CDSs), 3 rRNAs, and 45 tRNAs.

scholarly journals Draft Genome Sequence of Desulfurobacterium sp. Strain AV08, a Thermophilic Chemolithoautotroph Isolated from a Deep-Sea Hydrothermal Vent

2021 ◽  
Vol 10 (34) ◽  
Author(s):  
Emilie J. Skoog ◽  
Julie A. Huber ◽  
Margrethe H. Serres ◽  
Alice Levesque ◽  
Lisa Zeigler Allen
Keyword(s):  
Pacific Ocean ◽  
Genome Sequence ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Northeast Pacific ◽  
Axial Seamount ◽  
Northeast Pacific Ocean

A thermophilic chemolithoautotrophic bacterium was isolated from vent fluids at Axial Seamount, an active deep-sea volcano in the northeast Pacific Ocean. We present the draft genome sequence of Desulfurobacterium sp. strain AV08.

scholarly journals Draft Genome Sequence of Pseudomonas oceani DSM 100277T, a Deep-Sea Bacterium

2018 ◽  
Vol 6 (15) ◽  
pp. e00254-18 ◽  
Author(s):  
Elena García-Valdés ◽  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deep Seawater ◽  
Coding Sequences ◽  
Content Type ◽  
The Okinawa Trough

ABSTRACT Pseudomonas oceani DSM 100277T was isolated from deep seawater in the Okinawa Trough at 1390 m. P. oceani belongs to the Pseudomonas pertucinogena group. Here, we report the draft genome sequence of P. oceani, which has an estimated size of 4.1 Mb and exhibits 3,790 coding sequences, with a G+C content of 59.94 mol%.

scholarly journals Draft Genome Sequence of Mariprofundus micogutta Strain ET2

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Hiroko Makita ◽  
Shinro Nishi ◽  
Yoshihiro Takaki ◽  
Emiko Tanaka ◽  
Takuro Nunoura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Hydrothermal Field ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type

ABSTRACT Mariprofundus micogutta strain ET2 was isolated in 2014 from a deep-sea hydrothermal field on the Bayonnaise Knoll of the Izu-Ogasawara arc. Here, we report its draft genome, which comprises 2,497,805 bp and contains 2,417 predicted coding sequences.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07

2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Rachel M. Loughran ◽  
Edward A. Mitchell ◽  
Oliver B. Vining ◽  
David A. Gallegos ◽  
Monica C. Deadmond ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Deep Sea ◽  
Hydrothermal Vents ◽  
Draft Genome ◽  
Content Type ◽  
Streptomyces Sp ◽  
The Pacific ◽  
The Pacific Ocean ◽  
Axial Seamount ◽  
Type Strains

ABSTRACT The draft genome of Streptomyces sp. strain ventii, an environmental isolate recovered from deep-sea hydrothermal vents in the Pacific Ocean, is presented along with the resequenced draft genomes of the type strains Streptomyces bohaiensis 11A07 and Streptomyces lonarensis NCL 716.

scholarly journals Draft Genome Sequence of Anaerobic Fermentative Bacterium Anaeromicrobium sediminis DY2726D

2018 ◽  
Vol 6 (6) ◽  
pp. e00002-18
Author(s):  
Jing Zhang ◽  
Junxi Hu ◽  
Xiaobo Zhang ◽  
Xiang Zeng
Keyword(s):  
Pacific Ocean ◽  
Genome Sequence ◽  
Sediment Sample ◽  
Genome Annotation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
West Pacific Ocean ◽  
Ocean Sediment

ABSTRACT Here, we report the draft genome sequence of Anaeromicrobium sediminis DY2726D, isolated from a west Pacific Ocean sediment sample. The genome comprises 4,710,590 bp in 56 contigs, with a G+C content of 31.2%. A total of 3,811 protein-coding sequences were predicted. The genome annotation revealed that DY2726D may represent a marine type of Clostridiaceae.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of Hydrocarbon-Degrading Staphylococcus saprophyticus Strain CNV2, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Arghya Mukherjee ◽  
Bobby Chettri ◽  
James S. Langpoklakpam ◽  
Arvind K. Singh ◽  
Dhrubajyoti Chattopadhyay
Keyword(s):  
Crude Oil ◽  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Oil Refinery ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
First Report ◽  
Staphylococcus Saprophyticus

Here, we report the 2.6 Mb draft genome sequence of hydrocarbon-degrading Staphylococcus saprophyticus strain CNV2, isolated from oil-contaminated soil in Guwahati, India. CNV2 contains 2,545 coding sequences and has a G+C content of 33.2%. This is the first report of the genome sequence of an S. saprophyticus adapted to an oil-contaminated environment.

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