scholarly journals Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Olivia Molenda ◽  
Shuiquan Tang ◽  
Elizabeth A. Edwards
Keyword(s):  
Vinyl Chloride ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Reductive Dechlorination ◽  
Complete Genome ◽  
Microbial Consortium ◽  
Enrichment Culture ◽  
Metagenomic Sequencing ◽  
The West ◽  
Dehalococcoides Mccartyi

Dehalococcoides mccartyi strain WBC-2 dechlorinates carcinogen vinyl chloride to ethene in the West Branch Canal Creek (WBC-2) microbial consortium used for bioaugmentation. We assembled and closed the complete genome sequence of this prokaryote using metagenomic sequencing from an enrichment culture.

scholarly journals Complete Genome Sequence of a Phenanthrene Degrader, Burkholderia sp. HB-1 (NBRC 110738)

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Azusa Moriya ◽  
Hiromi Kato ◽  
Natsumi Ogawa ◽  
Yuji Nagata ◽  
...  
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Biological Resource ◽  
Computational Tools ◽  
Resource Center ◽  
Institute Of Technology ◽  
Circular Chromosomes

The phenanthrene-degrading Burkholderia sp. HB-1 was isolated from a phenanthrene-enrichment culture seeded with a pristine farm soil sample. We report the complete genome sequence of HB-1, which has been deposited to the stock culture (NBRC 110738) at Biological Resource Center, National Institute of Technology and Evaluation (NITE), Tokyo, Japan. The genome of strain HB-1 comprises two circular chromosomes of 4.1 Mb and 3.1 Mb. The finishing was facilitated by the computational tools GenoFinisher, AceFileViewer, and ShortReadManager.

scholarly journals Complete Genome Sequence of Dehalococcoides mccartyi Strain FL2, a Trichloroethene-Respiring Anaerobe Isolated from Pristine Freshwater Sediment

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Jun Yan ◽  
Yi Yang ◽  
Xiuying Li ◽  
Frank E. Löffler
Keyword(s):  
Complete Genome Sequence ◽  
Reductive Dechlorination ◽  
Complete Genome ◽  
Hydrogen Oxidation ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Reductive Dehalogenase ◽  
Dehalococcoides Mccartyi ◽  
Reductive Dehalogenase Genes

Dehalococcoides mccartyi strain FL2 couples growth to hydrogen oxidation and reductive dechlorination of trichloroethene and cis- and trans-1,2-dichloroethenes. Strain FL2 has a 1.42-Mb genome with a G+C content of 47.0% and carries 1,465 protein-coding sequences, including 24 reductive dehalogenase genes.

scholarly journals Complete Genome Sequence of Zika Virus Isolated from Semen

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Barry Atkinson ◽  
Victoria Graham ◽  
Rory W. Miles ◽  
Kuiama Lewandowski ◽  
Stuart D. Dowall ◽  
...  
Keyword(s):  
South America ◽  
Genome Sequence ◽  
Zika Virus ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Metagenomic Sequencing ◽  
Pacific Region ◽  
Western Pacific Region ◽  
The Caribbean ◽  
The Western Pacific

Zika virus (ZIKV) is an emerging pathogenic flavivirus currently circulating in numerous countries in South America, the Caribbean, and the Western Pacific Region. Using an unbiased metagenomic sequencing approach, we report here the first complete genome sequence of ZIKV isolated from a clinical semen sample.

scholarly journals Complete Genome Sequence of Gordonia rubripertincta SD5, a Soil Bacterium Isolated from a Di-(2-Ethylhexyl) Phthalate-Degrading Enrichment Culture

2020 ◽  
Vol 9 (45) ◽  
Author(s):  
Sang-Soo Han ◽  
Hye Kyeong Kang ◽  
Bok Yeon Jo ◽  
Byung-Gon Ryu ◽  
Hyun Mi Jin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Soil Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Ethylhexyl Phthalate

ABSTRACT We report the complete genome sequence of Gordonia rubripertincta SD5, isolated from a soil-derived di-(2-ethylhexyl) phthalate-degrading enrichment culture. The final genome assembly consists of a 5.10-Mbp chromosome and a plasmid (159 kbp). A total of 4,814 coding sequences were predicted, including 4,741 protein-coding sequences.

scholarly journals Complete Genome Sequence of Marinobacter sp. CP1, Isolated from a Self-Regenerating Biocathode Biofilm

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Zheng Wang ◽  
Brian J. Eddie ◽  
Anthony P. Malanoski ◽  
W. Judson Hervey ◽  
Baochuan Lin ◽  
...  
Keyword(s):  
Electron Transfer ◽  
Electric Current ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Microbial Consortium ◽  
Extracellular Electron Transfer

Marinobacter sp. CP1 was isolated from a self-regenerating and self-sustaining biocathode biofilm that can fix CO 2 and generate electric current. We present the complete genome sequence of this strain, which consists of a circular 4.8-Mbp chromosome, to understand the mechanism of extracellular electron transfer in a microbial consortium.

scholarly journals Complete Genome Sequence of Leisingera aquamixtae R2C4, Isolated from a Self-Regenerating Biocathode Consortium

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Lina Bird ◽  
Brian J. Eddie ◽  
Anthony P. Malanoski ◽  
Princess Pinamang ◽  
Sarah M. Glaven
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Microbial Consortium ◽  
Content Type ◽  
Dark Pigment ◽  
A Current

Here, we present the complete genome sequence of Leisingera aquamixtae R2C4, isolated from the electroautotrophic microbial consortium biocathode MCL (Marinobacter-Chromatiaceae-Labrenzia). As an isolate of a current-producing system, the genome sequence of L. aquamixtae will yield insights regarding electrode-associated microorganisms and communities. A dark pigment is also observed during cultivation.

scholarly journals Complete Genome Sequence of a Porcine Polyomavirus from Nasal Swabs of Pigs with Respiratory Disease

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Ben M. Hause ◽  
Catherine Smith ◽  
Brian Bishop ◽  
Chelsea Stewart ◽  
Randy Simonson
Keyword(s):  
Respiratory Disease ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sus Scrofa ◽  
Metagenomic Sequencing ◽  
Content Type ◽  
Nasal Swabs

ABSTRACT Metagenomic sequencing of pooled nasal swabs from pigs with unexplained respiratory disease identified a large number of reads mapping to a previously uncharacterized porcine polyomavirus. Sus scrofa polyomavirus 2 was most closely related to betapolyomaviruses frequently detected in mammalian respiratory samples.

scholarly journals Complete Genome Sequence of Achromobacter denitrificans PR1

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Ana C. Reis ◽  
Kevin Kroll ◽  
Margarita Gomila ◽  
Boris A. Kolvenbach ◽  
Philippe F. X. Corvini ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Illumina Miseq ◽  
Content Type ◽  
Oxford Nanopore

ABSTRACT Achromobacter denitrificans strain PR1 was isolated from an enrichment culture able to use sulfamethoxazole as an energy source. Here, we describe the complete genome of this strain sequenced by Illumina MiSeq and Oxford Nanopore MinION.

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