scholarly journals Complete Genome Sequence of a Phenanthrene Degrader, Burkholderia sp. HB-1 (NBRC 110738)

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Azusa Moriya ◽  
Hiromi Kato ◽  
Natsumi Ogawa ◽  
Yuji Nagata ◽  
...  
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Biological Resource ◽  
Computational Tools ◽  
Resource Center ◽  
Institute Of Technology ◽  
Circular Chromosomes

The phenanthrene-degrading Burkholderia sp. HB-1 was isolated from a phenanthrene-enrichment culture seeded with a pristine farm soil sample. We report the complete genome sequence of HB-1, which has been deposited to the stock culture (NBRC 110738) at Biological Resource Center, National Institute of Technology and Evaluation (NITE), Tokyo, Japan. The genome of strain HB-1 comprises two circular chromosomes of 4.1 Mb and 3.1 Mb. The finishing was facilitated by the computational tools GenoFinisher, AceFileViewer, and ShortReadManager.

scholarly journals Complete Genome Sequence of Sphingopyxis macrogoltabida Type Strain NBRC 15033, Originally Isolated as a Polyethylene Glycol Degrader

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Yuji Nagata ◽  
Mitsuru Numata ◽  
Kieko Tsuchikane ◽  
Akira Hosoyama ◽  
...  
Keyword(s):  
Polyethylene Glycol ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Biological Resource ◽  
Resource Center ◽  
Stock Culture ◽  
Institute Of Technology

Sphingopyxis macrogoltabida strain 203, the type strain of the species, grew on polyethylene glycol (PEG) and has been deposited to the stock culture at the Biological Resource Center, National Institute of Technology and Evaluation (NITE), under the number NBRC 15033. Here, we report the complete genome sequence of strain NBRC 15033. Unfortunately, genes for PEG degradation were missing.

scholarly journals Complete Genome Sequence of a Polypropylene Glycol-Degrading Strain, Microbacterium sp. No. 7

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Yuji Nagata ◽  
Mitsuru Numata ◽  
Kieko Tsuchikane ◽  
Akira Hosoyama ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Polypropylene Glycol ◽  
Linear Plasmids ◽  
Circular Chromosome ◽  
Computational Tools ◽  
Resource Center ◽  
Metabolic Products ◽  
Institute Of Technology

Microbacterium (formerly Corynebacterium ) sp. No. 7 was isolated from activated sludge as a polypropylene glycol (PPG)-assimilating bacterial strain. Its oxidative PPG degradation has been proposed on the basis of PPG dehydrogenase activity and the metabolic products. Here, we report the complete genome sequence of Microbacterium sp. No. 7. The genome of the strain No. 7 is composed of a 4,599,046-bp circular chromosome and two linear plasmids. The whole finishing was conducted in silico with aids of the computational tools GenoFinisher and AceFileViewer. Strain No. 7 is available from the Biological Resource Center, National Institute of Technology and Evaluation (NITE) (Tokyo, Japan).

scholarly journals Complete Genome Sequence of Polypropylene Glycol- and Polyethylene Glycol-Degrading Sphingopyxis macrogoltabida Strain EY-1

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Yuji Nagata ◽  
Mitsuru Numata ◽  
Kieko Tsuchikane ◽  
Akira Hosoyama ◽  
...  
Keyword(s):  
Polyethylene Glycol ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Polypropylene Glycol ◽  
Circular Chromosome ◽  
Computational Tools ◽  
Resource Center ◽  
Random Polymer ◽  
Institute Of Technology

Strain EY-1 was isolated from a microbial consortium growing on a random polymer of ethylene oxide and propylene oxide. Strain EY-1 grew on polyethylene glycol and polypropylene glycol and identified as Sphingopyxis macrogoltabida . Here, we report the complete genome sequence of Sphingopyxis macrogoltabida EY-1. The genome of strain EY-1 is comprised of a 4.76-Mb circular chromosome, and five plasmids. The whole finishing was conducted in silico , with aids of computational tools GenoFinisher and AceFileViewer. Strain EY-1 is available from Biological Resource Center, National Institute of Technology and Evaluation (Tokyo, Japan) (NITE).

scholarly journals Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Yuji Nagata ◽  
Mitsuru Numata ◽  
Kieko Tsuchikane ◽  
Akira Hosoyama ◽  
...  
Keyword(s):  
Polyvinyl Alcohol ◽  
Activated Sludge ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
In Silico ◽  
Complete Genome ◽  
Biological Resource ◽  
Circular Chromosome ◽  
Resource Center ◽  
Institute Of Technology

Strain 113P3 was isolated from activated sludge and identified as a polyvinyl alcohol (PVA)-degrading Pseudomonas species; it was later reidentified as Sphingopyxis species. Only three genes are directly relevant to the metabolism of PVA and comprise the pva operon, which was deposited as accession no. AB190228. Here, we report the complete genome sequence of strain 113P3, which has been conserved as a stock culture (NBRC 111507) at the Biological Resource Center, National Institute of Technology and Evaluation (NITE) (Tokyo, Japan). The genome of strain 113P3 is composed of a 4.4-Mb circular chromosome and a 243-kb plasmid. The whole finishing was conducted in silico except for four PCRs. The sequence corresponding to AB190288 exists on the chromosome.

scholarly journals Complete Genome Sequence of Vibrio coralliilyticus OCN008

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
Victoria N. Lydick ◽  
Douglas B. Rusch ◽  
Blake Ushijima ◽  
Julia C. van Kessel
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Marine Bacterium ◽  
Sequencing Data ◽  
Content Type ◽  
Complete Sequences ◽  
Vibrio Coralliilyticus ◽  
Circular Chromosomes ◽  
Illumina Sequencing Data

ABSTRACT Here, we report the complete genome sequence of Vibrio coralliilyticus OCN008, a marine bacterium that infects reef-building coral. Previous sequencing efforts yielded an incomplete sequence (210 contigs). We used Nanopore and Illumina sequencing data to obtain complete sequences of the two circular chromosomes (3.48 and 1.91 Mb) and one megaplasmid (244.69 kb).

scholarly journals Complete Genome Sequence of Burkholderia cenocepacia CR318, a Phosphate-Solubilizing Bacterium Isolated from Corn Root

2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Filip Zekic ◽  
Brian Weselowski ◽  
Ze-Chun Yuan
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phosphate Solubilization ◽  
Burkholderia Cenocepacia ◽  
Ecological Sustainability ◽  
Content Type ◽  
Phosphate Solubilizing ◽  
Circular Chromosomes ◽  
Insight Into

ABSTRACT Here, we report the complete genome sequence of the phosphate-solubilizing bacterium Burkholderia cenocepacia CR318, consisting of three circular chromosomes of 3,511,146 bp, 3,097,552 bp, and 1,056,069 bp. The data presented will facilitate further insight into the mechanisms of phosphate solubilization and its application for agricultural and ecological sustainability.

scholarly journals Complete Genome Sequence of Bacteriophage Fizzles, Isolated from Microbacterium foliorum

2022 ◽  
Author(s):  
Skyler Adams ◽  
Gabrielle Spotz ◽  
Riley Babcock ◽  
Chloe Butler ◽  
Samantha Conger ◽  
...  
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Double Stranded Dna

Microbacteriophage Fizzles has a 62,078-bp linear double-stranded DNA genome sequence, predicted to contain 104 protein-coding genes. Fizzles is a Siphoviridae actinobacteriophage isolated from an ant hill soil sample collected in Stephenville, TX. Microbacteriophage Fizzles has >83.6% nucleotide identity with microbacteriophages Squash and Nike.

scholarly journals Complete Genome Sequence of Streptomyces sp. TN58, a Producer of Acyl Alpha-l-Rhamnopyranosides

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Soumaya Najah ◽  
Teik Min Chong ◽  
Claude Gerbaud ◽  
Kok-Gan Chan ◽  
Lotfi Mellouli ◽  
...  
Keyword(s):  
Natural Products ◽  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Linear Chromosome ◽  
Streptomyces Sp ◽  
Specialized Metabolites

ABSTRACT Streptomyces sp. TN58, isolated from a Tunisian soil sample, produces several natural products, including acyl alpha-l-rhamnopyranosides. It possesses a 7.6-Mb linear chromosome. This is, to our knowledge, the first genome sequence of a microorganism known to produce acyl alpha-l-rhamnopyranosides, and it will be helpful to study the biosynthesis of these specialized metabolites.

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