Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water

2015 ◽  
Vol 211 ◽  
pp. 121-122 ◽  
Author(s):  
Fei Xia ◽  
Bin Zou ◽  
Cong Shen ◽  
Ting Zhu ◽  
Xin-Hua Gao ◽  
...  
Keyword(s):  
Methane Oxidation ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Tap Water

scholarly journals Complete Genome Sequence of a Phenanthrene Degrader, Burkholderia sp. HB-1 (NBRC 110738)

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Yoshiyuki Ohtsubo ◽  
Azusa Moriya ◽  
Hiromi Kato ◽  
Natsumi Ogawa ◽  
Yuji Nagata ◽  
...  
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Biological Resource ◽  
Computational Tools ◽  
Resource Center ◽  
Institute Of Technology ◽  
Circular Chromosomes

The phenanthrene-degrading Burkholderia sp. HB-1 was isolated from a phenanthrene-enrichment culture seeded with a pristine farm soil sample. We report the complete genome sequence of HB-1, which has been deposited to the stock culture (NBRC 110738) at Biological Resource Center, National Institute of Technology and Evaluation (NITE), Tokyo, Japan. The genome of strain HB-1 comprises two circular chromosomes of 4.1 Mb and 3.1 Mb. The finishing was facilitated by the computational tools GenoFinisher, AceFileViewer, and ShortReadManager.

scholarly journals Complete Genome Sequence of Methylomonas denitrificans Strain FJG1, an Obligate Aerobic Methanotroph That Can Couple Methane Oxidation with Denitrification

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Fabini D. Orata ◽  
K. Dimitri Kits ◽  
Lisa Y. Stein
Keyword(s):  
Nitrous Oxide ◽  
Methane Oxidation ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Nitrate Reduction ◽  
Complete Genome ◽  
Content Type ◽  
Formate Oxidation ◽  
Obligate Aerobic

ABSTRACT Methylomonas denitrificans strain FJG1 is a member of the gammaproteobacterial methanotrophs. The sequenced genome of FJG1 reveals the presence of genes that encode methane, methanol, formaldehyde, and formate oxidation. It also contains genes that encode enzymes for nitrate reduction to nitrous oxide, consistent with the ability of FJG1 to couple denitrification with methane oxidation.

scholarly journals Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Olivia Molenda ◽  
Shuiquan Tang ◽  
Elizabeth A. Edwards
Keyword(s):  
Vinyl Chloride ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Reductive Dechlorination ◽  
Complete Genome ◽  
Microbial Consortium ◽  
Enrichment Culture ◽  
Metagenomic Sequencing ◽  
The West ◽  
Dehalococcoides Mccartyi

Dehalococcoides mccartyi strain WBC-2 dechlorinates carcinogen vinyl chloride to ethene in the West Branch Canal Creek (WBC-2) microbial consortium used for bioaugmentation. We assembled and closed the complete genome sequence of this prokaryote using metagenomic sequencing from an enrichment culture.

scholarly journals Complete Genome Sequence of Methylosinus sp. Strain C49, a Methane-Oxidizing Bacterium Harboring phaABC Genes for Polyhydroxyalkanoate Synthesis

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Shohei Yasuda ◽  
Toshikazu Suenaga ◽  
Akihiko Terada
Keyword(s):  
Methane Oxidation ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Functional Genes ◽  
Pha Production

ABSTRACT We report a complete genome sequence of Methylosinus sp. strain C49, a methane-oxidizing bacterium (MOB) in the class Alphaproteobacteria, isolated from MOB-enriched biomass. The genome encodes the functional genes for methane oxidation (pmoA) and polyhydroxyalkanoate (PHA) biosynthesis (phaABC). Deciphering the genome will help research toward PHA production by MOB.

scholarly journals Complete Genome Sequence of Methylomonas koyamae LM6, a Potential Aerobic Methanotroph

2020 ◽  
Vol 9 (6) ◽  
Author(s):  
Dae-Hee Lee ◽  
Lavanya Madhavaraj ◽  
Gui Hwan Han ◽  
Hyewon Lee ◽  
Seung-Goo Lee ◽  
...  
Keyword(s):  
Methane Oxidation ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frames ◽  
Content Type ◽  
Methanotrophic Bacterium ◽  
Reading Frames

Methylomonas koyamae LM6 is a potential methanotrophic bacterium of interest for methane bioconversion. Here, we report the complete genome sequence of M. koyamae LM6, which contains 4,337 predicted open reading frames on one chromosome (4,894,002 bp) and one plasmid (186,658 bp), with genes involved in methane oxidation.

scholarly journals Complete Genome Sequence of Gordonia rubripertincta SD5, a Soil Bacterium Isolated from a Di-(2-Ethylhexyl) Phthalate-Degrading Enrichment Culture

2020 ◽  
Vol 9 (45) ◽  
Author(s):  
Sang-Soo Han ◽  
Hye Kyeong Kang ◽  
Bok Yeon Jo ◽  
Byung-Gon Ryu ◽  
Hyun Mi Jin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Soil Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Ethylhexyl Phthalate

ABSTRACT We report the complete genome sequence of Gordonia rubripertincta SD5, isolated from a soil-derived di-(2-ethylhexyl) phthalate-degrading enrichment culture. The final genome assembly consists of a 5.10-Mbp chromosome and a plasmid (159 kbp). A total of 4,814 coding sequences were predicted, including 4,741 protein-coding sequences.

scholarly journals Complete Genome Sequence of Rhodoferax sp. Strain BAB1, Isolated after Filter Sterilization of Tap Water

2020 ◽  
Vol 9 (38) ◽  
Author(s):  
Philipp Aurass ◽  
Antje Flieger
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Tap Water ◽  
Methylation Data

ABSTRACT Here, we announce the complete genome sequence of Rhodoferax sp. strain BAB1, which was isolated from filter-sterilized tap water. The genome consists of a 3.82-Mb chromosome. Moreover, we provide base methylation data and evidence of incomplete retention by 0.22-μm filters for this putative novel Rhodoferax species.

scholarly journals Complete Genome Sequence of Achromobacter denitrificans PR1

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Ana C. Reis ◽  
Kevin Kroll ◽  
Margarita Gomila ◽  
Boris A. Kolvenbach ◽  
Philippe F. X. Corvini ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Illumina Miseq ◽  
Content Type ◽  
Oxford Nanopore

ABSTRACT Achromobacter denitrificans strain PR1 was isolated from an enrichment culture able to use sulfamethoxazole as an energy source. Here, we describe the complete genome of this strain sequenced by Illumina MiSeq and Oxford Nanopore MinION.

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