scholarly journals Whole-Genome Sequences of Brucella melitensis Strain QH61, Isolated from Yak in Qinghai, China

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Xiaoan Cao ◽  
Zhaocai Li ◽  
Zhongzi Lou ◽  
Baoquan Fu ◽  
Yongsheng Liu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Brucella Melitensis ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Genome Sequences ◽  
Gram Negative ◽  
Wild Mammals

ABSTRACT The facultative intracellular Gram-negative bacterium Brucella melitensis causes brucellosis in domestic and wild mammals. Brucella melitensis QH61 was isolated from a yak suffering from abortion in 2015 in Qinghai, China. Here, we report the whole-genome sequence of B. melitensis strain QH61.

scholarly journals Whole-Genome Sequences of Brucella melitensis Strain QY1, Isolated from Sheep in Gansu, China

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Xiaoan Cao ◽  
Zhaocai Li ◽  
Zhongzi Lou ◽  
Baoquan Fu ◽  
Yongsheng Liu ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Human Disease ◽  
Brucella Melitensis ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Genome Sequences ◽  
Gram Negative ◽  
Content Type ◽  
Wild Mammals

ABSTRACT The facultative intracellular Gram-negative bacterium Brucella melitensis causes brucellosis in domestic and wild mammals, and it is a dominant pathogen responsible for human disease. This study reports the whole-genome sequencing of B. melitensis strain QY1, isolated from sheep suffering from abortion and arthritis in 2015 in Gansu, China.

scholarly journals Whole-Genome Sequence of a Brucella melitensis Strain Isolated from Sheep in Saudi Arabia

2018 ◽  
Vol 7 (21) ◽  
Author(s):  
Majed F. Alghoribi ◽  
Kamal H. Zidan ◽  
Abdulrahman A. Alswaji ◽  
Ali N. Alhafufi ◽  
Abdalla Ahmed ◽  
...  
Keyword(s):  
Saudi Arabia ◽  
Genome Sequence ◽  
Brucella Melitensis ◽  
Zoonotic Disease ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Kingdom Of Saudi Arabia ◽  
Gram Negative ◽  
Content Type

The intracellular Gram-negative bacterium Brucella melitensis causes a zoonotic disease in humans originating from animals. Here, we report the whole-genome sequence (WGS) of Brucella melitensis strain KSA_BM_07, isolated from sheep in March 2017 in Huraymila, Kingdom of Saudi Arabia.

scholarly journals Draft Genome Sequence of Cloacibacterium normanense NRS-1 Isolated from Municipal Wastewater

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Nicole R. Gay ◽  
Elizabeth Fleming ◽  
Julia Oh
Keyword(s):  
Genome Sequence ◽  
Municipal Wastewater ◽  
Draft Genome ◽  
Phosphate Removal ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Apparent Absence ◽  
Gram Negative ◽  
Human Stool

Cloacibacterium normanense is a Gram-negative bacterium recovered from untreated human wastewater. Given its high abundance in wastewater and its apparent absence in human stool, it may contribute to biological phosphate removal. Here, we perform a whole-genome sequence of C. normanense NRS-1(T) and examine particular features of this draft genome.

scholarly journals Whole-Genome Sequence of Chlamydia abortus Strain GN6 Isolated from Aborted Yak Fetus

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Zhaocai Li ◽  
Jinshan Cai ◽  
Xiaoan Cao ◽  
Zhongzi Lou ◽  
Yilin Chao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Fetal Loss ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
Chlamydia Abortus ◽  
Obligate Intracellular ◽  
Causative Agents

ABSTRACT The obligate intracellular Gram-negative bacterium Chlamydia abortus is one of the causative agents of abortion and fetal loss in sheep, goats, and cattle in many countries. It also affects the reproductivity of yaks (Bos grunniens). This study reports the whole-genome sequence of Chlamydia abortus strain GN6, which was isolated from aborted yak fetus in Qinghai-Tibetan Plateau, China.

scholarly journals Draft Whole-Genome Sequence of a Klebsiella pneumoniae Strain Isolated from a Marmoset in Thailand

2021 ◽  
Vol 10 (31) ◽  
Author(s):  
Komkiew Pinpimai ◽  
Wijit Bunlunara ◽  
Katriya Chankow ◽  
Rachod Tantilertcharoen ◽  
Pongthai Boonkam ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type

Klebsiella pneumoniae is a Gram-negative bacterium that can cause infection in various kinds of animals and humans. Here, we report the genome sequence of K. pneumoniae isolated from a captive marmoset in Thailand.

scholarly journals Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839

2019 ◽  
Vol 8 (25) ◽  
Author(s):  
Mohammed-Abbas Fazal ◽  
Sarah Alexander ◽  
Nicholas E. Grayson ◽  
Ana Deheer-Graham ◽  
Karen Oliver ◽  
...  
Keyword(s):  
Respiratory Tract ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
Strain Nctc

Haemophilus haemolyticus is a Gram-negative bacterium that is a commensal of the respiratory tract in humans. Here, we report the complete genome sequence available for Haemophilus haemolyticus strain NCTC 10839, which was originally isolated from the nasopharynx of a child.

scholarly journals Whole-Genome Sequence of Vibrio alginolyticus Isolated from the Mucus of the Coral Fungia danai in the Andaman Sea, India

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Tilothama Bhotra ◽  
Durg V. Singh
Keyword(s):  
Genome Sequence ◽  
Vibrio Alginolyticus ◽  
Andaman Sea ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Gram Negative

Vibrio alginolyticus , a halophilic Gram-negative bacterium, which is found in temperate marine and estuarine environments, is known to cause infections in humans and other organisms. We sequenced the genome of sulfamethoxazole-trimthoprim-positive V. alginolyticus strain 4-19 isolated from the mucus of the coral Fungia danai in the Andaman Sea, India.

scholarly journals Whole-proteome tree of life suggests a deep burst of organism diversity

2020 ◽  
Vol 117 (7) ◽  
pp. 3678-3686 ◽  
Author(s):  
JaeJin Choi ◽  
Sung-Hou Kim
Keyword(s):  
Information Theory ◽  
Genome Sequence ◽  
Tree Of Life ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
Alignment Free ◽  
Whole Transcriptome ◽  
Evolutionary Progression ◽  
Feature Frequency

An organism tree of life (organism ToL) is a conceptual and metaphorical tree to capture a simplified narrative of the evolutionary course and kinship among the extant organisms. Such a tree cannot be experimentally validated but may be reconstructed based on characteristics associated with the organisms. Since the whole-genome sequence of an organism is, at present, the most comprehensive descriptor of the organism, a whole-genome sequence-based ToL can be an empirically derivable surrogate for the organism ToL. However, experimentally determining the whole-genome sequences of many diverse organisms was practically impossible until recently. We have constructed three types of ToLs for diversely sampled organisms using the sequences of whole genome, of whole transcriptome, and of whole proteome. Of the three, whole-proteome sequence-based ToL (whole-proteome ToL), constructed by applying information theory-based feature frequency profile method, an “alignment-free” method, gave the most topologically stable ToL. Here, we describe the main features of a whole-proteome ToL for 4,023 species with known complete or almost complete genome sequences on grouping and kinship among the groups at deep evolutionary levels. The ToL reveals 1) all extant organisms of this study can be grouped into 2 “Supergroups,” 6 “Major Groups,” or 35+ “Groups”; 2) the order of emergence of the “founders” of all of the groups may be assigned on an evolutionary progression scale; 3) all of the founders of the groups have emerged in a “deep burst” at the very beginning period near the root of the ToL—an explosive birth of life’s diversity.

scholarly journals Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy ( Toxicodendron radicans ): TABLE 1.

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Phuong N. Tran ◽  
Nicholas E. H. Tan ◽  
Yin Peng Lee ◽  
Han Ming Gan ◽  
Steven J. Polter ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Endophytic Bacteria ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
Poison Ivy

Here, we report the whole-genome sequences and annotation of 11 endophytic bacteria from poison ivy ( Toxicodendron radicans ) vine tissue. Five bacteria belong to the genus Pseudomonas , and six single members from other genera were found present in interior vine tissue of poison ivy.

Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences

2013 ◽  
Vol 63 (Pt_7) ◽  
pp. 2742-2751 ◽  
Author(s):  
Henryk Urbanczyk ◽  
Yoshitoshi Ogura ◽  
Tetsuya Hayashi
Keyword(s):  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Taxonomic Revision ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
Genome Sequence Data ◽  
The Family

Use of inadequate methods for classification of bacteria in the so-called Harveyi clade (family Vibrionaceae, Gammaproteobacteria) has led to incorrect assignment of strains and proliferation of synonymous species. In order to resolve taxonomic ambiguities within the Harveyi clade and to test usefulness of whole genome sequence data for classification of Vibrionaceae, draft genome sequences of 12 strains were determined and analysed. The sequencing included type strains of seven species: Vibrio sagamiensis NBRC 104589T, Vibrio azureus NBRC 104587T, Vibrio harveyi NBRC 15634T, Vibrio rotiferianus LMG 21460T, Vibrio campbellii NBRC 15631T, Vibrio jasicida LMG 25398T, and Vibrio owensii LMG 25443T. Draft genome sequences of strain LMG 25430, previously designated the type strain of [Vibrio communis], and two strains (MWB 21 and 090810c) from the ‘beijerinckii’ lineage were also determined. Whole genomes of two additional strains (ATCC 25919 and 200612B) that previously could not be assigned to any Harveyi clade species were also sequenced. Analysis of the genome sequence data revealed a clear case of synonymy between V. owensii and [V. communis], confirming an earlier proposal to synonymize both species. Both strains from the ‘beijerinckii’ lineage were classified as V. jasicida, while the strains ATCC 25919 and 200612B were classified as V. owensii and V. campbellii, respectively. We also found that two strains, AND4 and Ex25, are closely related to Harveyi clade bacteria, but could not be assigned to any species of the family Vibrionaceae. The use of whole genome sequence data for the taxonomic classification of the Harveyi clade bacteria and other members of the family Vibrionaceae is also discussed.

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